LOCUS BG080393 671 bp mRNA linear EST 12-MAY-2010 DEFINITION H3053B05-5 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3053B05 5', mRNA sequence. ACCESSION BG080393 VERSION BG080393.2 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 671) AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X., Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H., Wood,W.H. III, Becker,K.G. and Ko,M.S.H. TITLE Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000) PUBMED 10922068 COMMENT On Jan 26, 2001 this sequence version replaced BG080393.1. Other_ESTs: H3053B05-3 Contact: George J. Kargul Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov This clone set has been freely distributed to the community. Please visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details. Plate: H3053 row: B column: 05 Seq primer: -21M13 Reverse POLYA=No. FEATURES Location/Qualifiers source 1..671 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3053B05-5" /db_xref="taxon:10090" /clone="H3053B05" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 213 a 118 c 123 g 217 t ORIGIN 1 cagcaaggag tgttaagtca ctttaggcta ttgaatgcta ttaactttta gtcttccaaa 61 ctactagtag aaatattcat ttaggtgttg ctgttcccat tctttcttta taatgtaggc 121 atgtttgtgg taagtggctt tccctttgct ctataacttt ctgaatcaag aggaaccctc 181 tatggatctg atattggtca caatacacta gactatatac acacagcatg ccatgatttg 241 aagagatttg aaagtgccct agatgagagt taaaacattt tacaggtaac atcaagttat 301 caattgtgcc cagaaagcaa gctatcatag tgttgaattc atagacgaga gttgtcatag 361 tagatgtgtg catgacgctt ggtagtaatt taccactcta actgtggtcc taagtatata 421 ggtatattat atcctactaa tatctagatt tgtttcaatc aaacacaaaa aagttgaagt 481 tagacaaatt ttgacaaaaa tactcatgca cttctgttat ttctttttca tccctcatgc 541 tccaatgaaa gtatacctgt gatactctac tgaaggaaat cagaagagaa atgttgttct 601 agcagaatct gtagtggacc acactatcac aagtgacttg atagctaact gaaggtggct 661 aaagaagccc a //