LOCUS BG080027 571 bp mRNA linear EST 12-MAY-2010 DEFINITION H3048A01-5 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3048A01 5', mRNA sequence. ACCESSION BG080027 VERSION BG080027.2 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 571) AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X., Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H., Wood,W.H. III, Becker,K.G. and Ko,M.S.H. TITLE Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000) PUBMED 10922068 COMMENT On Jan 26, 2001 this sequence version replaced BG080027.1. Other_ESTs: H3048A01-3 Contact: George J. Kargul Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov This clone set has been freely distributed to the community. Please visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details. Plate: H3048 row: A column: 01 Seq primer: -21M13 Reverse POLYA=No. FEATURES Location/Qualifiers source 1..571 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3048A01-5" /db_xref="taxon:10090" /clone="H3048A01" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 161 a 118 c 119 g 173 t ORIGIN 1 aagtgccagt attccctggg ttttggactt aaactagcaa tgcctgtgga agagactaaa 61 gacctgagac tctgtcttgg gatttggtgc atgcagttga ttccttgcta gttctcttac 121 caactgtgaa cactgatggg aagcaggata atgaagcttc cggaccatcc ctgctctgtg 181 tccatctact catccaatgg agtcattagc agtcaatcgc cgcttcactg gacactgagg 241 ggtcacagac ttaggctccc tttgagtcgc gtccagcgtg tcctagactt tatcatcttt 301 cagaggcgta ggcagactgt tcacaaaggc tttctgtagc tttccactgc aattaatctt 361 ggtcactccc tcaaatagta tattttttct agaaaagggg aaaaatggaa aaaaaaaagg 421 caatggaaaa tgttgaaatc cattcagttt ccatgttagc taaattactg taagattcct 481 ataatagctt ttcctggtaa ggcagaccca gtatgaaata gtaataacca tttgggctat 541 atttacatgc tactaaattt ttgtaataat t //