LOCUS BG079986 685 bp mRNA linear EST 12-MAY-2010 DEFINITION H3047C11-5 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3047C11 5', mRNA sequence. ACCESSION BG079986 VERSION BG079986.2 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 685) AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X., Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H., Wood,W.H. III, Becker,K.G. and Ko,M.S.H. TITLE Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000) PUBMED 10922068 COMMENT On Jan 26, 2001 this sequence version replaced BG079986.1. Other_ESTs: H3047C11-3 Contact: George J. Kargul Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov This clone set has been freely distributed to the community. Please visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details. Plate: H3047 row: C column: 11 Seq primer: -21M13 Reverse POLYA=No. FEATURES Location/Qualifiers source 1..685 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3047C11-5" /db_xref="taxon:10090" /clone="H3047C11" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 149 a 180 c 156 g 200 t ORIGIN 1 cttttctgac ttgacataga gacctttggg caagttgggc tggaaaagcc aacacttcca 61 tacccgtatt cggtataccc cgcaaggctt tgtagccgtg tctttcctgg agaggcgtta 121 gtcccaggac tacctcatgg gcagctccct tcccaaaccc ttggggccag gtggaattgc 181 aagtctgggc ttctagatct gcttgtgcac ctggtgcatc cttggcaaag ccatgttgac 241 tccttgggtc cccaagccct tatctgtcaa ataaaggcta aatgaagccc agtgtagttc 301 agacaccatt ccttcagccc aaagaggctt ctgttgtggt atcttctacc ctaagatgtc 361 cctgtgacac tcagggggtc agccatggta ttgtggtccc catgactcac aatggaagct 421 gagcactcag taccaagccc ttcatacgat gggtttcccc agtctttttt tttttgtttt 481 gttttgtttt gtttttaaga caaggtgtct ctgtgtagcc ctggctgtcc tggaactcac 541 tctgtagacc aggctggcct caaactcaga aatccgcctg cttctgcctc ccaagcactg 601 ggataaaagg tgtgcgctac cactgcccag ttggttttcc ctattcttga atacctgtga 661 caaaaatata taaattagac atggt //