LOCUS BG079938 603 bp mRNA linear EST 12-MAY-2010 DEFINITION H3046G04-5 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3046G04 5', mRNA sequence. ACCESSION BG079938 VERSION BG079938.2 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 603) AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X., Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H., Wood,W.H. III, Becker,K.G. and Ko,M.S.H. TITLE Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000) PUBMED 10922068 COMMENT On Jan 26, 2001 this sequence version replaced BG079938.1. Other_ESTs: H3046G04-3 Contact: George J. Kargul Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov This clone set has been freely distributed to the community. Please visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details. Plate: H3046 row: G column: 04 Seq primer: -21M13 Reverse POLYA=No. FEATURES Location/Qualifiers source 1..603 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3046G04-5" /db_xref="taxon:10090" /clone="H3046G04" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 161 a 126 c 135 g 181 t ORIGIN 1 gctcaaaatg gaaaccagag gggaatgact tttaagggag tagagccttg aaacttactc 61 ttggttacaa cgggtacttg ggcttcacta atctcgagga gtagatcaac ttcaggaaga 121 agggtatttt ctgttctttg gatcatggaa atgggcattc tcagccccaa ttactgggcc 181 tcctattgat agcctgtgag agccatgttc aaaaccactt ttttttgagc tagtaatgac 241 agacagatag ccctggggct tctttgaatg acataaaacc cctttaaagg cccttctcca 301 ctaggcctac tttcttggat ttcattagga aatcgtaagt gccacactct ctaatgatat 361 tttgagaagt agataaattc agcaagttct agcaaatggc acatggccta gttagatctc 421 atgctcaatc cacacatccc ccatcccctt tatagcacac tacttacttc ctttagctcg 481 agtgacctgg tggttggtgg aggagggtga agggaggtag tgtgctgtct gtatttggtg 541 gtataaacta aaagttttct ttagcaaact cagggtgtgt ttccacattc tactttagca 601 agc //