LOCUS BG079918 726 bp mRNA linear EST 12-MAY-2010 DEFINITION H3047F11-5 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3047F11 5', mRNA sequence. ACCESSION BG079918 VERSION BG079918.2 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 726) AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X., Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H., Wood,W.H. III, Becker,K.G. and Ko,M.S.H. TITLE Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000) PUBMED 10922068 COMMENT On Jan 26, 2001 this sequence version replaced BG079918.1. Other_ESTs: H3047F11-3 Contact: George J. Kargul Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov This clone set has been freely distributed to the community. Please visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details. Plate: H3047 row: F column: 11 Seq primer: -21M13 Reverse POLYA=No. FEATURES Location/Qualifiers source 1..726 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3047F11-5" /db_xref="taxon:10090" /clone="H3047F11" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 240 a 109 c 106 g 271 t ORIGIN 1 agatccggga gtgctggact tcctgttccc ttaccctgtg cagtgccagt tatgatgtgc 61 tgggttccta catgggaaaa actatggtta tccagtttgt atttccttgg taaatatttt 121 aaaactaaca cagtcattga ctttccaatt caataataaa gtttggcaaa gcctattttg 181 taaacaagtt aattttataa tgtaaaaaaa aagttaatct aaccttgact tgttatttgc 241 actttcatag tctatacttg acacattccc actttatata cagtaggatt ctacagacct 301 gtagatgttt ggtcaaatga atgctgttaa tatgtaaaat tctttgatta aacatttatt 361 acttaaacta tttccatttt tgtctcatta aattataaac ttcatttaaa actaattaga 421 aagcaaatct tgctttatat taaataccct ccaatatgac agtattaatt tggttctatt 481 atgtaattga atagtgccta atatttttac agtaacccac ttgctgaaaa ttgtataccc 541 aagaggtaaa tttgatttca ctatgacaat gtattaaaat tatgaaattt gataaatctg 601 tcatttgatg acaagtgtat taaaattgtg aatttagtgc tcattttcat ttctatcaat 661 ttatgaggaa aatgttatga tttccttgga atccagcaga gaaacagtga tagaacttga 721 agatct //