LOCUS BG079917 714 bp mRNA linear EST 12-MAY-2010 DEFINITION H3047F10-5 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3047F10 5', mRNA sequence. ACCESSION BG079917 VERSION BG079917.2 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 714) AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X., Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H., Wood,W.H. III, Becker,K.G. and Ko,M.S.H. TITLE Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000) PUBMED 10922068 COMMENT On Jan 26, 2001 this sequence version replaced BG079917.1. Other_ESTs: H3047F10-3 Contact: George J. Kargul Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov This clone set has been freely distributed to the community. Please visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details. Plate: H3047 row: F column: 10 Seq primer: -21M13 Reverse POLYA=No. FEATURES Location/Qualifiers source 1..714 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3047F10-5" /db_xref="taxon:10090" /clone="H3047F10" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 203 a 110 c 143 g 258 t ORIGIN 1 agatctctta aaagataccc catgagaata ttaataagca aattgctgtt aatccccaca 61 gacacttctg cattagttct gttttgtcac cggggtattt agtgtgccca gtcccaggag 121 agagcatgta gtacttcagg ctgctctgtc attaatctga cttagtcctt tgttccttgc 181 tttttttcct aaaaggaaat aaggaaagaa tgagagcaag caagcaaaca agcaagttat 241 ttcatcttgt cttctcagcc ttatttgcct gtgtaacaag cataattata gttgaattgt 301 atttactgaa gaaatctctt tggctatgtc aattaaaaaa atttttgttg tcctttgaga 361 agaggattat taacaatttt ttaggatttc tttagtgtgt aacctctctg gaacatgaaa 421 taagaagcac ggcaggaact gtttttagga ctgtttttag gacttagagg gttctttaat 481 tactttgttt tatggtcaga cagctaaagt aatggcaggt tgtgtgctca taagctaact 541 ttgagttaat tttattggaa gtcttttggt ttgaaactta tttcaattct tatgggcagt 601 ttgtcttagt ttgtttctct attgctatga tagagaccat agccaaaaac aatttgagga 661 ggaaagggtt tatttatttt ggcttacagt ttatcgtccc tcatgaaggg aaga //