LOCUS BG079910 633 bp mRNA linear EST 12-MAY-2010 DEFINITION H3047F02-5 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3047F02 5', mRNA sequence. ACCESSION BG079910 VERSION BG079910.2 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 633) AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X., Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H., Wood,W.H. III, Becker,K.G. and Ko,M.S.H. TITLE Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000) PUBMED 10922068 COMMENT On Jan 26, 2001 this sequence version replaced BG079910.1. Other_ESTs: H3047F02-3 Contact: George J. Kargul Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov This clone set has been freely distributed to the community. Please visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details. Plate: H3047 row: F column: 02 Seq primer: -21M13 Reverse POLYA=No. FEATURES Location/Qualifiers source 1..633 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3047F02-5" /db_xref="taxon:10090" /clone="H3047F02" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 178 a 148 c 146 g 161 t ORIGIN 1 acagattttc ttgaccctgt ttttcagctg atcgccttgg aaaaaaatga tgaacacaga 61 cttgtgcacg tagtcgccct gggccccaga aggaaaacca agagttcaga actctcaata 121 tgggtgaaaa cttcatttga gacagtctac actgcagctc aggctggcct ggtgttcact 181 gtgtagctta gactgacctt gaactcacag cagtcctagt cccaggctcc tgagtgctgg 241 gcttacaggc ctagctttaa agttctagaa caattaaact tgggtggcat cagaacgaat 301 ctttaaggac acggccttct gtgctttagc ggtactccat ctcttaagct tcatttggag 361 actatctgcc ctgtagcccc agattcacaa atcccttcct gttttcagat ataaccagag 421 agagaagctg tggggatgat cagcagatgg gagcctgttt ctccagttct acttgaactc 481 ctgtgtttcc aggatgacaa aggcacagag gaaacagaag gaagcctgtc tattcctgtg 541 cttagaaaga cccagataaa cagagctgac tgaatgcaag gcactaagtc actggcaaaa 601 acaacggtgt tgaatctcaa gaactgtact aag //