LOCUS BG079816 603 bp mRNA linear EST 12-MAY-2010 DEFINITION H3045D09-5 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3045D09 5', mRNA sequence. ACCESSION BG079816 VERSION BG079816.2 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 603) AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X., Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H., Wood,W.H. III, Becker,K.G. and Ko,M.S.H. TITLE Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000) PUBMED 10922068 COMMENT On Jan 26, 2001 this sequence version replaced BG079816.1. Other_ESTs: H3045D09-3 Contact: George J. Kargul Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov This clone set has been freely distributed to the community. Please visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details. Plate: H3045 row: D column: 09 Seq primer: -21M13 Reverse POLYA=No. FEATURES Location/Qualifiers source 1..603 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3045D09-5" /db_xref="taxon:10090" /clone="H3045D09" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 144 a 148 c 138 g 173 t ORIGIN 1 ggagctaagt gtcttgtacc cagggacgta gccttaacca tgagcaggaa gagctaacca 61 ggaagaggtt tggattatgc agtgaaacac acacagcaga gcatgcttta gatgcattga 121 gaaatagccc agcagtagca ctgtgtggag cagtttgaaa agctttctgg tatgcatgat 181 cctcacaaat gaggacagct gtcatctgaa gtcacaaacc ctaaagtaca atagccagta 241 tccgccagta ttgtacagaa tggctttgtt acccaaaaca caacccatgt gctgttcatt 301 gcttcctcta atcccttggc acccactgac ccggttgctg tctccatggg ctttcctttc 361 ccagcctttc agtatgtctt ccctcacgtg gtgatatgca tttacgttcc tccgtggatt 421 catgacttga ctgttcagcc cttctcattg agcagcgttc cattttctag ctgtatcaca 481 gcttgtcttg aaggccacct ggactgcttc tgagtttggg agtttgaagc aatgtctgta 541 gcaggtttcc ctgtgtgttt taattcctct ggataccaga gagctcaacc ctgggatcat 601 gtg //