LOCUS BG079415 629 bp mRNA linear EST 26-JAN-2001 DEFINITION H3039E04-5 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3039E04 5', mRNA sequence. ACCESSION BG079415 VERSION BG079415.1 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 629) AUTHORS Kargul,G.J., Dudekula,D.B., Qian,Y., Lim,M.K., Jaradat,S.A., Tanaka,T.S., Carter,M.G. and Ko,M.S.H. TITLE Verification and initial annotation of NIA mouse 15K cDNA clone set JOURNAL Unpublished COMMENT Other_ESTs: H3039E04-3 Contact: George J. Kargul Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov This clone set has been freely distributed to the community. Please visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details. Plate: H3039 row: E column: 04 Seq primer: -21M13 Reverse POLYA=No. FEATURES Location/Qualifiers source 1..629 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3039E04-5" /db_xref="taxon:10090" /clone="H3039E04" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 218 a 100 c 89 g 222 t ORIGIN 1 ttccaagaga tgttaattgg aaaagacctc accttaaact caccacagga gaacctaagc 61 ctttaggtgc tatcaagtga gattcaaatt aactggtgat aaccaaaaag gctttaacag 121 aaagtagagg attcttctat aatctattgg tatcaattac acttggtggt aatcaaatat 181 tagctatata ttctagttat tgttattaaa tgtgtccaca gctattcttt gacaagaaaa 241 aacattaatg taaaatcatc cttcttcacc ttaaagtttt aacatcctat tataaggctg 301 ctgtggtgct aattaagaat taagaattcc ttgttccaaa cagcaattgg ttattgcaga 361 atattgatat ttgacctatt acataccatc attttaaata aaattgatac tcatcctaaa 421 aataagttaa aaattgctta tatgcatgct tttgtttgtt tcttctataa attcatgcat 481 gcatcacatt tactgtattt aataacaacc cacctatggg gaaaagctat atgtgaatta 541 gatcacatgt ttattctttt gagtttctgc ctgcttcagc acagataatt aatttatgtg 601 ctatagatag tgtcttaaaa tattaaaaa //