LOCUS BG079402 629 bp mRNA linear EST 12-MAY-2010 DEFINITION H3039D03-5 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3039D03 5', mRNA sequence. ACCESSION BG079402 VERSION BG079402.2 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 629) AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X., Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H., Wood,W.H. III, Becker,K.G. and Ko,M.S.H. TITLE Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000) PUBMED 10922068 COMMENT On Jan 26, 2001 this sequence version replaced BG079402.1. Other_ESTs: H3039D03-3 Contact: George J. Kargul Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov This clone set has been freely distributed to the community. Please visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details. Plate: H3039 row: D column: 03 Seq primer: -21M13 Reverse POLYA=No. FEATURES Location/Qualifiers source 1..629 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3039D03-5" /db_xref="taxon:10090" /clone="H3039D03" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 188 a 127 c 154 g 160 t ORIGIN 1 ccgaagtctg caggaaacac agcacaaatc taagcagctc atatgtgagt catttttctt 61 tgaaaaatat gaaggctcaa ttatcatact gctcggtgct attttgagta agaaagcccc 121 gcacactacc ctgacgctgc tacttactag ttttactaaa tggtaaaatc aagccaaggg 181 gggggggata tccaggtaag gttgttcctt aatacaagaa gaacaatgtc tgcaaatacc 241 tgggtaaggt atggtgaaga aggcgctggg gagaggttgt tactgtctcc tgggatggca 301 acgaaggaca gcagcatctt tcctggtaca gatcagagga ggtagagcca cactgacggc 361 ttcattcctc agtagacatt attacaagtg ctgtgtgttt cttttatcgc cttctaacac 421 agaagcagaa attaccacaa aagaagcagg cgctctcaag agtgcctttc acttcctttg 481 ttaatgacat ggcaaagagc tactaagctt agtggaagac tgaattccat ttcctggaaa 541 aatctctgcc aacagaagac tgtaggagtc catgatttga aagttctaga gggacaggaa 601 gtggcgatgg tgggcagaat ctgctccat //