LOCUS BG079161 629 bp mRNA linear EST 12-MAY-2010 DEFINITION H3036E10-5 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3036E10 5', mRNA sequence. ACCESSION BG079161 VERSION BG079161.2 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 629) AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X., Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H., Wood,W.H. III, Becker,K.G. and Ko,M.S.H. TITLE Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000) PUBMED 10922068 COMMENT On Jan 26, 2001 this sequence version replaced BG079161.1. Other_ESTs: H3036E10-3 Contact: George J. Kargul Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov This clone set has been freely distributed to the community. Please visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details. Plate: H3036 row: E column: 10 Seq primer: -21M13 Reverse POLYA=No. FEATURES Location/Qualifiers source 1..629 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3036E10-5" /db_xref="taxon:10090" /clone="H3036E10" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 136 a 128 c 118 g 247 t ORIGIN 1 cccaaagtcg tattttgaag tccaagacaa cattcaggga gcacacttgt tctaaaatca 61 attcagatta gacaagctat gttataccag cttgcaatca tgccagcagt ggaggagtgt 121 tcctctttca ccacatcctt gccagcatct gctgtcacct gagtttttga tcttcaccat 181 tttctgactg gtatgaggtg aaatctcagg gttgttttga tttgcatttc cctgatgact 241 aaggatgttg aacatttctt taggtacttc tcagccattc agtattcctc agttaaaagt 301 tctttgttta gctctgtacc ccatttttaa taggtttatt ttggttctct ggagtctaac 361 ttcttgagtt ctttgtatat atttgatatt accctctaac tgttataggc ttggtaacga 421 tcttttccca atctgttggt tgctcttttg tcctattgac agtgtccttt gccttacgga 481 agttttgtaa ttttatgagg tcccatttgt taattcttga tcttagagca taagctatta 541 ttggtgtgct gttcaggaaa atttcccctg tgcccatgtg cttgaggctc ttccccactt 601 tcttttttgt tagattcagt gtatctggt //