LOCUS BG079077 619 bp mRNA linear EST 12-MAY-2010 DEFINITION H3035E06-5 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3035E06 5', mRNA sequence. ACCESSION BG079077 VERSION BG079077.2 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 619) AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X., Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H., Wood,W.H. III, Becker,K.G. and Ko,M.S.H. TITLE Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000) PUBMED 10922068 COMMENT On Jan 26, 2001 this sequence version replaced BG079077.1. Other_ESTs: H3035E06-3 Contact: George J. Kargul Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov This clone set has been freely distributed to the community. Please visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details. Plate: H3035 row: E column: 06 Seq primer: -21M13 Reverse POLYA=No. FEATURES Location/Qualifiers source 1..619 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3035E06-5" /db_xref="taxon:10090" /clone="H3035E06" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 165 a 113 c 108 g 233 t ORIGIN 1 ccagaagtga gcaccagacc ccctctcaga ttatgtttag gggagcaatc atgtgtgtgc 61 tgggaattga acctctggaa gagcaaccag tgctcttaac cactgagcca tctctgcagc 121 acctggcttt tgtgttctga tgttgattaa agttttagat gtttgtactc ttacatttat 181 ttatctctta tggtttctta attttgtatc agcctaaaat taatctttcc agagtttgaa 241 gttacttttt tgtagtagcc ttttctggct tcttccagat tctttcaact gattaacaga 301 acgttacaat tctgtgatat tttaatgtat cgataccaac acttacctta ttcagattta 361 aaaattatga aataatgtag ctgtgaacac ccagtctttg aagactttta taaaattctt 421 ttctactgta agtagaaata ataggaaatg gaagttccgt tataaatttc acttggctat 481 tttagtgtcc cagttgcatg catagttgat ttttcctatt atctctacat gtatagggag 541 gtgagcgtta acattccttg aaacctttct gtacaaactt gaatgcagtt tgattttctt 601 ggccctgcat atttcctga //