LOCUS BG078943 690 bp mRNA linear EST 12-MAY-2010 DEFINITION H3033H05-5 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3033H05 5', mRNA sequence. ACCESSION BG078943 VERSION BG078943.2 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 690) AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X., Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H., Wood,W.H. III, Becker,K.G. and Ko,M.S.H. TITLE Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000) PUBMED 10922068 COMMENT On Jan 26, 2001 this sequence version replaced BG078943.1. Other_ESTs: H3033H05-3 Contact: George J. Kargul Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov This clone set has been freely distributed to the community. Please visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details. Plate: H3033 row: H column: 05 Seq primer: -21M13 Reverse POLYA=No. FEATURES Location/Qualifiers source 1..690 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3033H05-5" /db_xref="taxon:10090" /clone="H3033H05" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 174 a 140 c 164 g 212 t ORIGIN 1 ctgtcttcag acacaccaga agagggcatc agttcccatt acagatggtt gtgagccacc 61 atgtggttaa ggagtcagtg gtcttaacca ctgagccatc tctccaaccc ttataatttt 121 ctgtaaagaa tcccttcttt ctttccacgc caggttttct gtgtcttcag tgaagacaca 181 gtgaagctct ttgttaggga cagaaggaca acacaggctc ttggtccttt taatacaaga 241 gggaatctgt attttcattc tttaacgtgt tgttgataca ctgtagatct tatttcgtca 301 tatttttgtg aatctacatt aacaaagagg ggtgatactt gtattgatgt tgctttcttt 361 gatgataaag aatacacacc aagctgcagc gtacttaagg cactagcaag tcattcctac 421 aacagagaag aataaatccc aggttttatt cccaagcctg aggacttggg ttgataggaa 481 gcgttgtcat tccaggagtc ggtgtcattc gaggacattg ctgtgttctt cacctgggag 541 gagtggcagg acctagacat tgctcagaag ttgctctaca gggatgtgat gctggagaac 601 tacagtagcc tggtgtcctt gggtgagtag ctccctgtag tgctcagcag cagttgtttt 661 ctgttgataa gtagaggaac tttcgtcctg //