LOCUS BG078656 589 bp mRNA linear EST 12-MAY-2010 DEFINITION H3030D01-5 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3030D01 5', mRNA sequence. ACCESSION BG078656 VERSION BG078656.2 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 589) AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X., Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H., Wood,W.H. III, Becker,K.G. and Ko,M.S.H. TITLE Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000) PUBMED 10922068 COMMENT On Jan 26, 2001 this sequence version replaced BG078656.1. Other_ESTs: H3030D01-3 Contact: George J. Kargul Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov This clone set has been freely distributed to the community. Please visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details. Plate: H3030 row: D column: 01 Seq primer: -21M13 Reverse POLYA=No. FEATURES Location/Qualifiers source 1..589 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3030D01-5" /db_xref="taxon:10090" /clone="H3030D01" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 206 a 90 c 110 g 183 t ORIGIN 1 caaggccact gtagtcatta acctgttatc agctaacaaa acttaaatta cctgaaaaag 61 acacttggtg cagaggccat aactaagtct taaagacatc tttttaaaaa ctacatcatc 121 cttaggtagt tctatagagg gaaataatag acagattaag atgaaagaaa agctttctgg 181 gatgattcag ttataggaaa tgccaagaaa agggcattta attataatat cctaatttta 241 catcacaaca ttacagaatt acacaaaagg ataatgtgtg tatttttttt aaattagtgt 301 tgcaggaatg ttcttttaaa tgtactaggg gatgaataat ttgagctctg aaaatagagg 361 aagatgatgg ggttcatttc tcacctctct ttattttaaa tattaaaaaa tatattttct 421 tcctaaagga attccagttt acaaaagtta acttgaaacc aaggtaattt aggattataa 481 aaacggggcc agatgccttc ctgatcgctc ttaacatagg actgtcttgg tatgcagatg 541 ggcttctttg tgatcaggga gagcttcgca tctggacatg aacaagctc //