LOCUS BG078395 618 bp mRNA linear EST 12-MAY-2010 DEFINITION H3027D05-5 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3027D05 5', mRNA sequence. ACCESSION BG078395 VERSION BG078395.2 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 618) AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X., Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H., Wood,W.H. III, Becker,K.G. and Ko,M.S.H. TITLE Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000) PUBMED 10922068 COMMENT On Jan 26, 2001 this sequence version replaced BG078395.1. Other_ESTs: H3027D05-3 Contact: George J. Kargul Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov This clone set has been freely distributed to the community. Please visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details. Plate: H3027 row: D column: 05 Seq primer: -21M13 Reverse POLYA=No. FEATURES Location/Qualifiers source 1..618 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3027D05-5" /db_xref="taxon:10090" /clone="H3027D05" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 117 a 192 c 141 g 168 t ORIGIN 1 ggtgatcctc caggacctaa ggtttcggta ttatcttcgg ggcctcttca cccggagtag 61 gcttctttgg cttgcgaacc ttcagcagat gtctgccact tccaacatga gagtcttcct 121 gcctgtgctg ttttttttcc ttctgggcat ggagcaagtt cattccctga tgtgcttctc 181 atgtaccgat cagaagaaca atataaactg cctgtggcca gtttcatgcc aggagaaaga 241 ccattactgt atcacgttat ctgccgctgc gggctttggg aatgtcaacc ttggctacac 301 cctgaacaag gactgctccc cgatctgccc cagtgaaaat gtcaatctca atctcggtgt 361 ggcgtccgtg aacagctact gctgccaaag ctccttctgc aacttcagcg cagctggcct 421 cggacttcgt gccagtatcc cactactggg ccttggactc ctgcttagct tgttggctct 481 gctgcagctg agcccctgac catcccccat gtgttctcca tatcccccca gctcaggaaa 541 agcccagctc cttttaggtc ccaggggacc ctaggaacct tcagctcctc ctgggtgtgt 601 ctagttcccc ctccacac //