LOCUS BG077928 635 bp mRNA linear EST 12-MAY-2010 DEFINITION H3020F04-5 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3020F04 5', mRNA sequence. ACCESSION BG077928 VERSION BG077928.2 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 635) AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X., Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H., Wood,W.H. III, Becker,K.G. and Ko,M.S.H. TITLE Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000) PUBMED 10922068 COMMENT On Jan 26, 2001 this sequence version replaced BG077928.1. Other_ESTs: H3020F04-3 Contact: George J. Kargul Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov This clone set has been freely distributed to the community. Please visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details. Plate: H3020 row: F column: 04 Seq primer: -21M13 Reverse POLYA=No. FEATURES Location/Qualifiers source 1..635 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3020F04-5" /db_xref="taxon:10090" /clone="H3020F04" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 118 a 227 c 157 g 133 t ORIGIN 1 ggaggagccg tgtcgctgtc gtctcggtcc atcaggcctt cagcgggtct ccattgcccg 61 tctctctgga ctcaccgccg ccactgtgcc gcgcctagga ctcggatcct gccgggaaaa 121 tgtcagatga attttcgttg gcagatgcgc tacctgaaca gtcctctgcc aaaccgcctg 181 ctgtgaccaa tacaaaagct ggccattctt ctcaagggtg gccaggctcc agcccgtgga 241 gtaacccaag tgctccacct gcaatgccat ctggactccc cccgagtagc gcagcaccct 301 ctactgtgcc ttttggacca gtaccaacag gaatgtatcc ctccatgcct ccaaccggac 361 cacccccagg acccccggga ccctttcctc ctcctggacc atcatgcccc ccacctggtg 421 ttccttatcc agcccctgct gtgccaggcc ctggccccac agggccatat gctacgccaa 481 atgtgcctat gccagagctg cctaggccgt atggtgcgcc cacagatcca gctgcagccg 541 gttctttagg tccatgggga cccatgtctt ctggaccttg ggcaccagga attgcggggc 601 agcatcctaa catgccatat cgatctccag ggcca //