LOCUS BG076591 598 bp mRNA linear EST 26-JAN-2001 DEFINITION H3003D01-5 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3003D01 5', mRNA sequence. ACCESSION BG076591 VERSION BG076591.1 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 598) AUTHORS Kargul,G.J., Dudekula,D.B., Qian,Y., Lim,M.K., Jaradat,S.A., Tanaka,T.S., Carter,M.G. and Ko,M.S.H. TITLE Verification and initial annotation of NIA mouse 15K cDNA clone set JOURNAL Unpublished COMMENT Other_ESTs: H3003D01-3 Contact: George J. Kargul Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov This clone set has been freely distributed to the community. Please visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details. Plate: H3003 row: D column: 01 Seq primer: -21M13 Reverse POLYA=No. FEATURES Location/Qualifiers source 1..598 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3003D01-5" /db_xref="taxon:10090" /clone="H3003D01" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 127 a 195 c 167 g 109 t ORIGIN 1 gtccggtcta gcgccaggtt ccacacgaac gtgcgttcaa cgtgacgggc gagagggcgg 61 ccccctttcc ggccgcaccc cgtttcccaa gacgaacggc tctccgcacc ggaccccggt 121 cccgacgccc ggcgggggga gaccccgcgc cgccgcgggg acgacgcggg gaccccgccg 181 agcggggacg gacggggacc cggctatccg gggccaaccg aggctccttc ggcgctgccg 241 tatcgttccg cctgggcggg attctgactt agaggcgttc agtcataatc ccacagatgg 301 tagcttcgcc ccattggctc ctcagccaag cacatacacc aaatgtctga acctgcggtt 361 cctctcgtac tgagcaggat taccatggca acaacacatc atcagtaggg taaaactaac 421 ctgtctcacg acggtctaat cccagctcac gttccctatt agtgggtgaa caatccaacg 481 cttggtgaat tctgcttcac aatgatagga agagccgaca tcgaaggatc aaaaagcgac 541 gtcgctatga acgcttggcc gccacaagcc agttatccct gtggtaactt ttctgaca //