LOCUS BG072954 580 bp mRNA linear EST 12-MAY-2010 DEFINITION H3116H07-3 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3116H07 3', mRNA sequence. ACCESSION BG072954 VERSION BG072954.2 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 580) AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X., Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H., Wood,W.H. III, Becker,K.G. and Ko,M.S.H. TITLE Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000) PUBMED 10922068 COMMENT On Jan 26, 2001 this sequence version replaced BG072954.1. Other_ESTs: H3116H07-5 Contact: George J. Kargul Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov This clone set has been freely distributed to the community. Please visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details. Plate: H3116 row: H column: 07 Seq primer: -21M13 Forward POLYA=Yes. FEATURES Location/Qualifiers source 1..580 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3116H07-3" /db_xref="taxon:10090" /clone="H3116H07" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 206 a 100 c 79 g 195 t ORIGIN 1 cttaccaatc attatttttt attaatatat tttacaagac tgcagttgaa ataatattaa 61 atacaaattt gtttttatac agaaagtgta ataaagttaa aatagttcct tgtaattcat 121 agcattattg caatgcttac aaaagttttg catagagtgt gcaaggattg atgttattta 181 aacaaaacta aaacactctt ctcatctcac acccaaaccc agagaaaaca aaacgaaaca 241 aaataaaata aaacctaaaa taacacaaag taaatactcc attgctttat tcatccagat 301 gtggttcctt tttcaaagtt cataatcaca gaacaattga acttttatga ccacattttt 361 tttttgttgt tgttaagagt cccagagtgt cttctccaaa gggtatccat catgagggat 421 gtcctacctc ctatctaaag tatgaccaca tcaggtatgc ttttgtgggc aaaatgttga 481 ctaagagaga taagaaaatc tatcccacct cttcatgaaa atattggatg gaaattgctt 541 ttgtgttact ccattataaa tatgccatcg gttcctattt //