LOCUS BG072942 582 bp mRNA linear EST 26-JAN-2001 DEFINITION H3116G06-3 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3116G06 3', mRNA sequence. ACCESSION BG072942 VERSION BG072942.1 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 582) AUTHORS Kargul,G.J., Dudekula,D.B., Qian,Y., Lim,M.K., Jaradat,S.A., Tanaka,T.S., Carter,M.G. and Ko,M.S.H. TITLE Verification and initial annotation of NIA mouse 15K cDNA clone set JOURNAL Unpublished COMMENT Other_ESTs: H3116G06-5 Contact: George J. Kargul Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov This clone set has been freely distributed to the community. Please visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details. Plate: H3116 row: G column: 06 Seq primer: -21M13 Forward POLYA=Yes. FEATURES Location/Qualifiers source 1..582 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3116G06-3" /db_xref="taxon:10090" /clone="H3116G06" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 192 a 115 c 100 g 175 t ORIGIN 1 aatacctaca ttttcttaat tgaggtttcc tcttttcaaa tgaatttagt ttgtgtcaag 61 ttgacataaa actggccaaa attccattta gagaccatgc tatccaaaga tcttataacc 121 aggaacattt tgaatttccg gcatcttcag attttggagt atttgaatat acaaaataaa 181 gtatctacag atatcccatc aacttaaaca taaaattgtc acttgtgctt catgtacacc 241 ttaaacacac agataataat aaccatttca tagcatccat acactgtttt taaaattaaa 301 aatagagttt gttaggcatc tttcttagtt agggtttcta ttgctgtgat gaaacaccat 361 tgaccaaaaa agcaagttgg ggaggaatgg gtctatctgc ttacacatcc ctatcactgc 421 tcattattaa aagtcaggag aagaactcaa acagggcagg aacttggagc aggagctgct 481 gcagagtcca tgacagggtg ctgcttacag gcttattccc atggcttatt cagtctgctt 541 tctcatagaa accaggacca ccagccagga atagaaataa cc //