LOCUS BG072917 563 bp mRNA linear EST 12-MAY-2010 DEFINITION H3116E04-3 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3116E04 3', mRNA sequence. ACCESSION BG072917 VERSION BG072917.2 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 563) AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X., Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H., Wood,W.H. III, Becker,K.G. and Ko,M.S.H. TITLE Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000) PUBMED 10922068 COMMENT On Jan 26, 2001 this sequence version replaced BG072917.1. Other_ESTs: H3116E04-5 Contact: George J. Kargul Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov This clone set has been freely distributed to the community. Please visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details. Plate: H3116 row: E column: 04 Seq primer: -21M13 Forward POLYA=Yes. FEATURES Location/Qualifiers source 1..563 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3116E04-3" /db_xref="taxon:10090" /clone="H3116E04" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 133 a 156 c 133 g 141 t ORIGIN 1 aaacttacag ttttggataa cattaaagta cattttccaa caaaactttt gaagagcgtg 61 tgtgtgtgtg tgtgtgtgtg tgtgtgtgtg tgtgtgtgta gagctgttgt gggaaatatt 121 aaaatttggc ctgcaagctt ccctacacta ctgcggggta ctggcaactc tgcccaggtg 181 ggttggccgg ccatgccctg gggggcaatg gccgacctgg tattatctca tggaaaatct 241 ctggctcaga actccagaat ctctccaccc agctcgctag gtccccactg gcgggtcgct 301 accacgccag cacccaggct tcaacccccc cccccacagc ctttgtggcc cacattagac 361 aaacccacgg tttgcaccat acctttctct ctggaaccca gtcgaattgc cgtgagaaga 421 aaacaccaca caaacttagc tcagaaacag tggtaactca gtctctgggc gcagcaatga 481 aaaccctatt gactctgact cctctggtgg cgatcctgag gatctgccat gataccagga 541 aactcttagc tacatctcgt cct //