LOCUS BG072883 578 bp mRNA linear EST 26-JAN-2001 DEFINITION H3116B03-3 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3116B03 3', mRNA sequence. ACCESSION BG072883 VERSION BG072883.1 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 578) AUTHORS Kargul,G.J., Dudekula,D.B., Qian,Y., Lim,M.K., Jaradat,S.A., Tanaka,T.S., Carter,M.G. and Ko,M.S.H. TITLE Verification and initial annotation of NIA mouse 15K cDNA clone set JOURNAL Unpublished COMMENT Other_ESTs: H3116B03-5 Contact: George J. Kargul Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov This clone set has been freely distributed to the community. Please visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details. Plate: H3116 row: B column: 03 Seq primer: -21M13 Forward POLYA=Yes. FEATURES Location/Qualifiers source 1..578 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3116B03-3" /db_xref="taxon:10090" /clone="H3116B03" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 154 a 148 c 124 g 152 t ORIGIN 1 agcaatataa cgagtttatt ggggtcactt gtaggaatag gggtttgtgt tgttccagga 61 gcaggaacga ctcaaaaagc agctctatca ccaaagccca catcatcatg ggtaacaact 121 ctacacaact tgcaggctgc ttgactagtc agggaatctc ctctcccagg cagccaggcc 181 ttctctgggg agctctgctg gtaagtcaat ctgtcccatt ctgtcctgtt cccatacagt 241 tccatttcta caaccttggg aaagcacttt gtgactctta agcttcagct tcctaagaca 301 cgtgatgctt atttagtgtc ttggggctcc cctccccttc ttcctggaag gatgtttcaa 361 gcagaagaaa attaccatgt aacactagct gctggcttct gtccttgttt taggtaccca 421 ccctccacct atgaggtgac catgacacca tgacccaaca tgtcttgagt tcttaaaaca 481 cgtggtctgc agcctcacaa ggcagagact tgagacatca ttagctacag agaaaagcta 541 gcagctcagc taaacattgg agtataaaag aacaggac //