LOCUS BG072646 572 bp mRNA linear EST 26-JAN-2001 DEFINITION H3113C08-3 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3113C08 3', mRNA sequence. ACCESSION BG072646 VERSION BG072646.1 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 572) AUTHORS Kargul,G.J., Dudekula,D.B., Qian,Y., Lim,M.K., Jaradat,S.A., Tanaka,T.S., Carter,M.G. and Ko,M.S.H. TITLE Verification and initial annotation of NIA mouse 15K cDNA clone set JOURNAL Unpublished COMMENT Other_ESTs: H3113C08-5 Contact: George J. Kargul Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov This clone set has been freely distributed to the community. Please visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details. Plate: H3113 row: C column: 08 Seq primer: -21M13 Forward POLYA=Yes. FEATURES Location/Qualifiers source 1..572 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3113C08-3" /db_xref="taxon:10090" /clone="H3113C08" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 209 a 111 c 94 g 158 t ORIGIN 1 cgtgacactt agaagtcagc tttatggaaa tataaagtcc aacacatttc attacaccaa 61 aagggggaca aagtagcatt tgaataaagt aggcttctta acactcagga aatgaaagga 121 gcaaaatata tatttaaaat tttcttgttt aaacaataaa gagtaccatg gtaagctaag 181 aagttggtct aacaaaaaaa aaatcctatc gtaagtatat agaataatta ggatatttct 241 aaacttatta gatagcaaaa aaagtctcaa aagatatata tgcctcctga tactttgata 301 aaagtatagt ttatgtaggc ttaaccaatg tagacatgtt tatagcttca aattagcaaa 361 ttcacctatt agtactctct acatgttatt ctacgagtat tctctacgag ttattctggt 421 tcccaagaac aaagtcagaa aacctttgca atgtgcaggt gcacatggaa gcagtcagtc 481 accatccgct gtcctgtcat ggtccacaca aacagccaag agccagcatc ttctctcctc 541 cagcccttag aggagcaaca taaccccaag cc //