LOCUS BG072268 686 bp mRNA linear EST 12-MAY-2010 DEFINITION H3108F07-3 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3108F07 3', mRNA sequence. ACCESSION BG072268 VERSION BG072268.2 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 686) AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X., Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H., Wood,W.H. III, Becker,K.G. and Ko,M.S.H. TITLE Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000) PUBMED 10922068 COMMENT On Jan 26, 2001 this sequence version replaced BG072268.1. Other_ESTs: H3108F07-5 Contact: George J. Kargul Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov This clone set has been freely distributed to the community. Please visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details. Plate: H3108 row: F column: 07 Seq primer: -21M13 Forward POLYA=Yes. FEATURES Location/Qualifiers source 1..686 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3108F07-3" /db_xref="taxon:10090" /clone="H3108F07" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 192 a 172 c 142 g 180 t ORIGIN 1 gattaatgat tgattcaaaa ggtcccaagt gcattatgag caacgctact cctgggccgg 61 tgatcctgag cacaccacaa gagcgagcga gcaagcagtg tcctccctgg cctgtctcag 121 ttcttgcctt gaattcctga cctgccttcc ctgaatgatg attgcaacat ggaagtttaa 181 tctaggtaac ccctttcctc cccaggttgg tttggtcagt gttttattat agaggcaggg 241 cagcctaatt agaacagccg gtgactactc gacatctttc aatactcttt ctatgatcac 301 tacaagaatc acatctatgg aactttgaca gaattcacaa caacgactag aaaaaacctg 361 acatacacgt ttttaaaaat ataaaaagaa ggaagggtct ggaaagatgg ctcagtagat 421 ggctctcttg ctgtgtttgc tgaggtccca cttgctgtgt ttgctgaggt cccagagtca 481 gttctcagca tccacccagt ggctcacaac cccctgtaac accagttccc agggatccaa 541 ctccatcttc tggcttccac aggcactggg caggcactaa atgcataata tataaatgcc 601 ggcaaaacaa cacatataca cacaccaaat acaaatcttt ctttaaagga gcagggtgtg 661 cttgatggta cacgccttta cttctg //