LOCUS BG072230 727 bp mRNA linear EST 12-MAY-2010 DEFINITION H3108C01-3 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3108C01 3', mRNA sequence. ACCESSION BG072230 VERSION BG072230.2 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 727) AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X., Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H., Wood,W.H. III, Becker,K.G. and Ko,M.S.H. TITLE Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000) PUBMED 10922068 COMMENT On Jan 26, 2001 this sequence version replaced BG072230.1. Other_ESTs: H3108C01-5 Contact: George J. Kargul Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov This clone set has been freely distributed to the community. Please visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details. Plate: H3108 row: C column: 01 Seq primer: -21M13 Forward POLYA=Yes. FEATURES Location/Qualifiers source 1..727 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3108C01-3" /db_xref="taxon:10090" /clone="H3108C01" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 194 a 149 c 187 g 197 t ORIGIN 1 gacctttttg tttttttatt ggggtgtggg ggtagacagg gtcacggtat atagcccagg 61 ataaccctga actcctggtt cctcctgtct cccaggtgct gggattacag gtgggtacca 121 ttattcctgg ctccacagtg ttttaaagtg ttcaggcatg caagcccaga gcagactttg 181 tactttccgg tacaggggga cactggatag aaatattcac acagaaactc caggtcagca 241 ggaagttcaa agcaccattc aaggcaggta agaaagttcc ttcaacttgc tgttccaaaa 301 atctctagac agccacaatc tcaagagcat gctatcttgg tgcactttgg tttcttaaaa 361 caaaaacaaa acacaggtaa gaatgttttt gttttaatct caggtgtggg atgccaggct 421 gcttcagact gtccacagca gctgactatg atttgcctca tgctctagca ggagtgtagt 481 tttgccagca gcagacagtt tctctgagtg tgtgatgatt ggaatttctg gggacttttc 541 agaagtacat aagtgctagg gcccccgaga agcggggtgg gttgttgttt gctgttggtc 601 ggtgtttgtg aagtggtcgt gggcgaagaa gaaacaagaa gaaatgagat atcttggcag 661 caaagatcat tgctccaagg aactcgacac cccttaatca gcaagaagtc gtccaacaat 721 ataacag //