LOCUS BG072191 625 bp mRNA linear EST 26-JAN-2001 DEFINITION H3107G09-3 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3107G09 3', mRNA sequence. ACCESSION BG072191 VERSION BG072191.1 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 625) AUTHORS Kargul,G.J., Dudekula,D.B., Qian,Y., Lim,M.K., Jaradat,S.A., Tanaka,T.S., Carter,M.G. and Ko,M.S.H. TITLE Verification and initial annotation of NIA mouse 15K cDNA clone set JOURNAL Unpublished COMMENT Other_ESTs: H3107G09-5 Contact: George J. Kargul Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov This clone set has been freely distributed to the community. Please visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details. Plate: H3107 row: G column: 09 Seq primer: -21M13 Forward POLYA=Yes. FEATURES Location/Qualifiers source 1..625 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3107G09-3" /db_xref="taxon:10090" /clone="H3107G09" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 181 a 142 c 141 g 161 t ORIGIN 1 cttttgggga agtccaggta ctttattcag ttgcaaattg taaagctaaa gctcagtctc 61 cagcttcctg tgggggagct ggcttagaga gtagcaagaa aacagctttt ctgggagcct 121 gagttcccag ctgaattcta agcaaaagag taattttagt ctccagagtg atacttacaa 181 gaagattcag gatctgtgtt caactgacga attaatctct cgggcagcca ccgagctcca 241 tcttcatctc gtgaaaaaac acaaaccgag ccccttcccc agattggaac cggatttgga 301 cccttccatt cgttagttag caggtgtatt agtcagggtt ctctagagtc acagaactta 361 tggatagtct ctagataata aaggaattta ttgatgactt acagtcggca gctcaattcc 421 caacaatcgt tcagtcacag ctgtgaatgg aagtccaagg atctagcagt tactcagtct 481 cacgcagcaa gcaggcgaag gagcaggagc aagagcaaga gctagactcc cttcttccaa 541 tgtccttata ttgtctccag caaaaggtgt agcccagatt aaaggtgtgt tccaccacac 601 ctttaatccc agatgaaagg catag //