LOCUS BG071386 636 bp mRNA linear EST 26-JAN-2001 DEFINITION H3098A11-3 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3098A11 3', mRNA sequence. ACCESSION BG071386 VERSION BG071386.1 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 636) AUTHORS Kargul,G.J., Dudekula,D.B., Qian,Y., Lim,M.K., Jaradat,S.A., Tanaka,T.S., Carter,M.G. and Ko,M.S.H. TITLE Verification and initial annotation of NIA mouse 15K cDNA clone set JOURNAL Unpublished COMMENT Other_ESTs: H3098A11-5 Contact: George J. Kargul Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov This clone set has been freely distributed to the community. Please visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details. Plate: H3098 row: A column: 11 Seq primer: -21M13 Forward POLYA=Yes. FEATURES Location/Qualifiers source 1..636 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3098A11-3" /db_xref="taxon:10090" /clone="H3098A11" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 210 a 127 c 122 g 177 t ORIGIN 1 gagttgtggt gaatggggtc ccagaaatct ctaactatta caggccactg tcagtgcttt 61 ggattatcct ccagatctcc atggtaagac taaattgctg aagatattat atatctgaat 121 caaaaatcac ggagaaatca aatgggtact gcccaggaag cttcgtctct cctggctagc 181 tagaaggcgc tctgtatgat acagcagagg aaagtaatct cagccagtgg taaacctttc 241 aagccacagc acatggtctg agcttgaatc tgcccacaga tgcaatagtg gcatggtgct 301 acgttctgac tggatttaag gccttttcca taaaatcaaa cccatatttg ccaatgttaa 361 tgaagcaaaa caacctgtgg gtatgtcaga ggcctaatgg aaaactaata ttattctagt 421 aaatggatta gtattaaaag gactcctaat gacttactgc tatatacaag attagtgcat 481 ctctcaatta taaccagatt ctacttcttc ttgaagtaaa aataacaatt aatactgagc 541 cccacaactg gttgacattc atagaataaa agaccgagga gtgttaagtc ctaaattgga 601 catccatttt acatagacac atatatagct catcaa //