LOCUS BG071001 693 bp mRNA linear EST 12-MAY-2010 DEFINITION H3093F02-3 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3093F02 3', mRNA sequence. ACCESSION BG071001 VERSION BG071001.2 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 693) AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X., Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H., Wood,W.H. III, Becker,K.G. and Ko,M.S.H. TITLE Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000) PUBMED 10922068 COMMENT On Jan 26, 2001 this sequence version replaced BG071001.1. Other_ESTs: H3093F02-5 Contact: George J. Kargul Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov This clone set has been freely distributed to the community. Please visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details. Plate: H3093 row: F column: 02 Seq primer: -21M13 Forward POLYA=Yes. FEATURES Location/Qualifiers source 1..693 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3093F02-3" /db_xref="taxon:10090" /clone="H3093F02" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 194 a 146 c 115 g 238 t ORIGIN 1 ccctctataa ttagcttccc ttttctctcc ttgggagagt tagacatatc atatcctatt 61 gtcaaatttt tctgattcgt aactttgtct gccactcaat tagacaacac tttcaaatat 121 ggatgtttcc ttctacaaac ttatttttct tcattgtttg ggattaaagc tgtgtactaa 181 gggtgtgtcc ttattccagc cagagcaatt aaagggatgt gctaagggct gagccacacc 241 acaactagaa acaagttttt ttcagtaaat aacaaaatct cagagttcaa aatgcagtca 301 aatatcctga aacactgttt ttttttaaag aatccaaaat tcccgaattg tcaccatgtt 361 tctcctttct gttttaagcc atttattatg ctgggtggaa attataaaca gagacatttt 421 caatggaata ggcgtttttc aggtcagtga caaggttttc aggtgacctc acctgctatt 481 tctactggag tggctttgcc tttgatgtag ggatataaaa acagctgagc aatcctatta 541 cctgcatcaa attgcatctc tctacataga ccttaatttt attttctcct ttgaaatttt 601 catttacaat cctggatgta caatgaatcg ttgggaagtc aacccaccgc tgctcttcca 661 gaggtcctga gttcaattcc cggcaaccac ata //