LOCUS BG070667 624 bp mRNA linear EST 26-JAN-2001 DEFINITION H3089G11-3 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3089G11 3', mRNA sequence. ACCESSION BG070667 VERSION BG070667.1 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 624) AUTHORS Kargul,G.J., Dudekula,D.B., Qian,Y., Lim,M.K., Jaradat,S.A., Tanaka,T.S., Carter,M.G. and Ko,M.S.H. TITLE Verification and initial annotation of NIA mouse 15K cDNA clone set JOURNAL Unpublished COMMENT Other_ESTs: H3089G11-5 Contact: George J. Kargul Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov This clone set has been freely distributed to the community. Please visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details. Plate: H3089 row: G column: 11 Seq primer: -21M13 Forward POLYA=Yes. FEATURES Location/Qualifiers source 1..624 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3089G11-3" /db_xref="taxon:10090" /clone="H3089G11" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 166 a 166 c 105 g 187 t ORIGIN 1 ccctaagtct taaaatccct tcatcaacac taagccatgg aatatcaggc atctccaagt 61 catttccagt aggccatctt ttgataaaca cctcagccaa ccattcaaac aaacttttga 121 cacctttttt aactatgcga gcttccgtat taaacctaga atctctactc agaggaccca 181 tgtcaataaa ctcagcctgc tctagtttta tgttccttcc acccttatcc cacaccctta 241 aaatccattc ccacacatat tcaccaggtt tctgcttgaa tgaattagca aactcattaa 301 gctccttagt agtgtagcga atttcctcat ggactacact ttctacctcc cctctaggag 361 cctgttttgc tttgagtctg gttacaggtc tagaagaaac tattggtggg ccgtgagcag 421 actctgcaaa attaatttcc tcatgtgggg aaggcattat ttcaagaggt ggggctgagg 481 gtactacttc ctcaggtggg gcaaaccctt gagaatctga ggattcaaaa ttctcagctt 541 caacatggtc ttcccacaca tccccatccc atgttgtagg atcccattct ttgccaatta 601 gagcccttac tttaactgtc gatg //