LOCUS BG070565 642 bp mRNA linear EST 12-MAY-2010 DEFINITION H3088G02-3 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3088G02 3', mRNA sequence. ACCESSION BG070565 VERSION BG070565.2 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 642) AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X., Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H., Wood,W.H. III, Becker,K.G. and Ko,M.S.H. TITLE Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000) PUBMED 10922068 COMMENT On Jan 26, 2001 this sequence version replaced BG070565.1. Other_ESTs: H3088G02-5 Contact: George J. Kargul Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov This clone set has been freely distributed to the community. Please visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details. Plate: H3088 row: G column: 02 Seq primer: -21M13 Forward POLYA=Yes. FEATURES Location/Qualifiers source 1..642 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3088G02-3" /db_xref="taxon:10090" /clone="H3088G02" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 166 a 152 c 131 g 193 t ORIGIN 1 aagatttatt tattatatgt aagtacactg tagctgtctt cagacactcc agaagagggc 61 gtcagatctt gttacagatg gttgtgagcc accatgtggt tgctgggatt tgaactctgg 121 accttatcat ctctcttgtt gggcacagct aaatgcaatc tgttcagaac ctcattcact 181 ttatttcctt tcattttcgt ttctactcgg tgagccaaaa gcctgtcaca cgcctctgtt 241 ttaacttgaa tgacaccttc ctcagtcagg gtactggtct cgatgacagg gaatccttca 301 gcctgcaagt ctagaaatat tttctgatct tcttcagaaa gttcagctat tctcttcaca 361 tcacatttgt ttgctacaac aataagaggc ttgttgataa acagaggtct gatattctgg 421 aagagttcta actgctcctt taacccatgt ccacactgct cagacagatc catcacatac 481 agaactgcag ctcggaggtg ggccagggct gtgatggcct gcatctcaat ggtgttccga 541 tcctccaaag gatgatccaa aatccctggg gtatctacaa cctgccagcg cagatactta 601 taatccatgt gcccaacaaa cagagatttg gtggtaaatg ca //