LOCUS BG070550 676 bp mRNA linear EST 12-MAY-2010 DEFINITION H3088E10-3 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3088E10 3', mRNA sequence. ACCESSION BG070550 VERSION BG070550.2 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 676) AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X., Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H., Wood,W.H. III, Becker,K.G. and Ko,M.S.H. TITLE Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000) PUBMED 10922068 COMMENT On Jan 26, 2001 this sequence version replaced BG070550.1. Other_ESTs: H3088E10-5 Contact: George J. Kargul Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov This clone set has been freely distributed to the community. Please visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details. Plate: H3088 row: E column: 10 Seq primer: -21M13 Forward POLYA=Yes. FEATURES Location/Qualifiers source 1..676 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3088E10-3" /db_xref="taxon:10090" /clone="H3088E10" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 159 a 176 c 120 g 221 t ORIGIN 1 caagataata cagccctgtt ttattaaaag atccacattg tacttgtggg tgggcggggc 61 acttagccat cctctcagca ggatgtcaga tcaccttcct cttgtgtcta ctggcaccct 121 gaaggaagca ctggccttag cacatgtggc cactgctgtg tcactggagc gccattttaa 181 acacacctct gctcacttct gaactgctaa acatcatcct tggagaaagc acaaaggtta 241 ggtatgcaaa caattcctcg tctctgcacc atcccatgcc tggtaggcct gtccaaacta 301 ctgttcacat tcaagagaag ctactgtcag tgattcctcc gcaccacact cagtgctcat 361 accactttct cctcgcctca tgcataattt attgcagcag tttgtttctt ctatatatat 421 atataaaaga ttccctaata acttttcttc cattcagtct accttgcaac tgcccctgtg 481 tagattgact ggttttagtc actgccttta catttacttc ttagtgcagt ttaaagctcc 541 aatcttattc agtcctgttg ttctgttgtt ctgtcacatc caagaaacca gcagtctgct 601 aatgcctttg tgtatgtatt cacatacacg tgcatctctt tttctttttg gagacagggt 661 ctttgtagac ctgttt //