LOCUS BG070434 631 bp mRNA linear EST 26-JAN-2001 DEFINITION H3087C11-3 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3087C11 3', mRNA sequence. ACCESSION BG070434 VERSION BG070434.1 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 631) AUTHORS Kargul,G.J., Dudekula,D.B., Qian,Y., Lim,M.K., Jaradat,S.A., Tanaka,T.S., Carter,M.G. and Ko,M.S.H. TITLE Verification and initial annotation of NIA mouse 15K cDNA clone set JOURNAL Unpublished COMMENT Other_ESTs: H3087C11-5 Contact: George J. Kargul Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov This clone set has been freely distributed to the community. Please visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details. Plate: H3087 row: C column: 11 Seq primer: -21M13 Forward POLYA=No. FEATURES Location/Qualifiers source 1..631 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3087C11-3" /db_xref="taxon:10090" /clone="H3087C11" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 148 a 151 c 136 g 174 t ORIGIN 1 ctttttaaaa aaataaaggt ttttgttttt gtatgaaact aagaactatt tacatagtcc 61 ttgctttcct gaaactcatt atatagacca ggatagcctt atactcaaga gatccatctg 121 cctctgaatc ctaagtgttg ggattaaagg tgtgtgcccc atgtctggcc agcaaacaga 181 tccttgaatt ttctaaattt gattatcact gtgtgatacc ggcgaaccct tcttagggcg 241 tgctgtaggg tatcaaggta ccncagntgc cngctacttg nacaggccnn cncgacacnt 301 aataaactcg aggaatgtgg atccnatgta tacacggact acgcaggcat atgtgtatca 361 gtatgtaccc acctcgtctg cnactttcct gtgactttcn acttactgcc ngatacggtt 421 tcgaantcac ccagaggaaa gggactagan ctcatgcact ngntgaaagg acggtctcag 481 gacatagttt ctgttctcag ggcttccggc aggccagcct ngggtgctca gcaaggttga 541 cncggtgttg ctctcttttt ccanctctca ctgcctctca gcgcatccnt tctacaggan 601 acnagtccca gtgaggcagg gctgccctgt c //