LOCUS BG070283 679 bp mRNA linear EST 12-MAY-2010 DEFINITION H3085F09-3 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3085F09 3', mRNA sequence. ACCESSION BG070283 VERSION BG070283.2 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 679) AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X., Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H., Wood,W.H. III, Becker,K.G. and Ko,M.S.H. TITLE Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000) PUBMED 10922068 COMMENT On Jan 26, 2001 this sequence version replaced BG070283.1. Other_ESTs: H3085F09-5 Contact: George J. Kargul Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov This clone set has been freely distributed to the community. Please visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details. Plate: H3085 row: F column: 09 Seq primer: -21M13 Forward POLYA=Yes. FEATURES Location/Qualifiers source 1..679 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3085F09-3" /db_xref="taxon:10090" /clone="H3085F09" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 243 a 126 c 137 g 173 t ORIGIN 1 aattattttt gaaaatgaac tctgggcagt ttattctcaa gtcattacag tgttccaccg 61 actggacata cagagacagc agggtaacag taaacattag gaggcacatt cctgttctga 121 aaggagatac attatacaca cagggaaaat acagcagata acacggtatt aactaacgta 181 actgctgaca cttcggatag gatatattta caagaaaata tgctttaaaa tacttaaata 241 atttccacaa gcttacaaaa gaattgagat aaatatttgg agatcctgat aatcacaagg 301 acatattcct atgcatttga ataaatgtaa gtctagaaaa agtcccaaaa tagagctaat 361 attttgccac catgaaatat atcaaattac cgataccaaa atatgataaa atgaacgcgc 421 actgtggagg ctgcaccaaa gcaaacagcg ccaggctcat caatactgcc agagtctgta 481 caagggtccc tacgcttgtg cattaacaag gaacctgtaa gagagcctgg gtgatgaata 541 cggcagcaga ggggtgataa ctgcctagcc accttgttgt cctatggttt tctgatgcag 601 gtgcacaaga gaaaactaca tagaactcta acatattagc ttatgaatac aaaaggtgag 661 tggtacgttc ttgtgctgg //