LOCUS BG070254 645 bp mRNA linear EST 12-MAY-2010 DEFINITION H3085D02-3 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3085D02 3', mRNA sequence. ACCESSION BG070254 VERSION BG070254.2 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 645) AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X., Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H., Wood,W.H. III, Becker,K.G. and Ko,M.S.H. TITLE Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000) PUBMED 10922068 COMMENT On Jan 26, 2001 this sequence version replaced BG070254.1. Other_ESTs: H3085D02-5 Contact: George J. Kargul Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov This clone set has been freely distributed to the community. Please visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details. Plate: H3085 row: D column: 02 Seq primer: -21M13 Forward POLYA=Yes. FEATURES Location/Qualifiers source 1..645 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3085D02-3" /db_xref="taxon:10090" /clone="H3085D02" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 216 a 143 c 112 g 174 t ORIGIN 1 gacaagtatg cagacatcat ttatttggtc cataagtaca gtatatttgt tgtttgagtt 61 tacaaaacat caaatataaa taacttgaaa ctgtaacaaa tacacaaaaa ttggcttctt 121 acacagacat accaggcagt acaaactgaa aatctgggta aattaacatt gttttacatt 181 aatatacaca gtgccaggta atgtttaaaa aacaagtttc aatgcatagc acttgacact 241 tctgtgaatc tttcaggtaa gagtatgaaa atggttagat ctaggctaaa aataactttt 301 ctctagccaa aaataaaggc ataatattta tacccaggtt gcagcgttcc taccccacag 361 tgttttccac taggaaatga tagctaaggc tatttacagg gaaggcaaca tgcacgcccg 421 cgttctttca gctcatcacc cagctttgct caaagggttg caaattctat tcctacttca 481 acacagcaac agtctcgaac agtctcagca aatgaacgct gaacggaacc atcaaagcca 541 cacaaaggat ctaacttttg gttccgacca gaccaagggc aggagcctgc tcagtctaac 601 gctatgacgt catctggatc ttccatctgc tccaagcggc acttc //