LOCUS BG069642 620 bp mRNA linear EST 12-MAY-2010 DEFINITION H3078E09-3 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3078E09 3', mRNA sequence. ACCESSION BG069642 VERSION BG069642.2 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 620) AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X., Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H., Wood,W.H. III, Becker,K.G. and Ko,M.S.H. TITLE Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000) PUBMED 10922068 COMMENT On Jan 26, 2001 this sequence version replaced BG069642.1. Contact: George J. Kargul Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov This clone set has been freely distributed to the community. Please visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details. Plate: H3078 row: E column: 09 Seq primer: -21M13 Forward POLYA=Yes. FEATURES Location/Qualifiers source 1..620 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3078E09-3" /db_xref="taxon:10090" /clone="H3078E09" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 178 a 140 c 119 g 183 t ORIGIN 1 caatcaataa aaagatggtt tatttaaaaa aaaaacagcc taacaaatct taatttacat 61 gatttcagaa tcaacatgat catagctgga atgctgtaga cgtctgtcac ttctatattt 121 tattctcata gttacagtat ccagtataga gaggttgtgc agctattcca cggctgacca 181 ttctgcagcg gtgcacggcc agtcgtttgt aggcattttc taggtcagtg acagttttag 241 ggctccagag tctctcacca acagcgcttg ctcgaggcca taatcttgga gtaaggttag 301 ttgcatccac aaattctccc cacaggcaag cttctccacc aataacaagt tgtttctgct 361 tctcagagcc ttcaaaatta aggggctcaa ctttgtagta gtttttccag tcttgcccat 421 agctgatcag gtctaagtac caaggagcag aaaggatggc agggaagcca gagcctgtga 481 cttgctttag ctcatatgaa taatgctcac tcttccacac ttcgattact gtgcccggct 541 gaagctccac cttatcatca aaaacttctt gccaaacaat ggagttcttc tttaaggatg 601 aaataatttc caaaatcttt //