LOCUS BG069639 681 bp mRNA linear EST 12-MAY-2010 DEFINITION H3078E06-3 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3078E06 3', mRNA sequence. ACCESSION BG069639 VERSION BG069639.2 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 681) AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X., Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H., Wood,W.H. III, Becker,K.G. and Ko,M.S.H. TITLE Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000) PUBMED 10922068 COMMENT On Jan 26, 2001 this sequence version replaced BG069639.1. Other_ESTs: H3078E06-5 Contact: George J. Kargul Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov This clone set has been freely distributed to the community. Please visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details. Plate: H3078 row: E column: 06 Seq primer: -21M13 Forward POLYA=Yes. FEATURES Location/Qualifiers source 1..681 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3078E06-3" /db_xref="taxon:10090" /clone="H3078E06" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 183 a 167 c 142 g 189 t ORIGIN 1 aaaagcgttc actagtctca gccatttctc tttattctca aagcgtaaat gctcaaaagt 61 aatcatattc actagctgga tgcctggtaa gcaaggcatt taaataatga acaagtaagt 121 gagcaagctc tcttcagatt caatagagtc cttcatttga gctgattccc cttaatttat 181 tcacagaact ttaggctcat tttacatgtc tgctcacaca attaattacc atgattgagt 241 tctccaacac tgtaaaacta gaccaagaga tgcccattta cagcatgtgt caggtggggg 301 agggtattta ttactcggcc cttagctgaa taagaggcat ggagtcattt tatgagtatt 361 taagggaaaa cagcctcctt ctagcctaac agaacataac tgttttttaa tctcttgtat 421 aattcttcga actatgaaat cccagaagag gaagtggtcg caagaaggag agtccttcta 481 ggttggagtt cattcatttc caagtggcct gtccagctcc tggaccgctt caatgtctag 541 agaaatccgt ttcctctgag ccaaagtcgg cctctcgact gcatccccga ggccccactg 601 gtccgtgccg aggcgtcgag gccagtcacc acctcctcct cctccagcca ggcggaccgc 661 agtccacttc tgtaggggcg a //