LOCUS BG069069 678 bp mRNA linear EST 12-MAY-2010 DEFINITION H3072D06-3 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3072D06 3', mRNA sequence. ACCESSION BG069069 VERSION BG069069.2 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 678) AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X., Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H., Wood,W.H. III, Becker,K.G. and Ko,M.S.H. TITLE Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000) PUBMED 10922068 COMMENT On Jan 26, 2001 this sequence version replaced BG069069.1. Other_ESTs: H3072D06-5 Contact: George J. Kargul Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov This clone set has been freely distributed to the community. Please visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details. Plate: H3072 row: D column: 06 Seq primer: -21M13 Forward POLYA=Yes. FEATURES Location/Qualifiers source 1..678 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3072D06-3" /db_xref="taxon:10090" /clone="H3072D06" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 189 a 138 c 112 g 239 t ORIGIN 1 agggatagcc agtatttact gcattcttaa ggcagatttt gactactaaa cttgacccct 61 tcttaatgtt tatagtgtaa gcatttaaga ttaaaaataa tacacagctt ttgctataag 121 tcttggtata tgcagcacgt ttttatcgtc ttctacctgt ttaaggcagt tactgtccct 181 cagtattctt ttgctcgtct ctaaccatgc tctgctgtaa gagaatgtgg ttgtgctgaa 241 gcctgactca cggtcaagtc ttaaatggtc ttagaacctt agaatcctgc agctgctggt 301 gacacactcg ccacttatct gtttcttcta tcatttccaa caggaaaata gtcacacctt 361 ctgaaacata aatctatttc ttctaagaaa tagtatcaaa atttgctttg cattttgaag 421 ctactacata aaataatttt agaactgtta gagttgtctt ggcaacctga gccatatatc 481 gatacaatgc tgtctttacc tcgggaaaca ctttctgtct tcactgccag cattgcttta 541 cctgatctcc attcagccat gactcaggag tatctcaact gtttcaaggt ttaggtttta 601 tttacaataa ttatgtaaac aactttttca tgtctctgtt atacatggag ctttctaggg 661 cttataaaaa gaaaactg //