LOCUS BG067439 689 bp mRNA linear EST 26-JAN-2001
DEFINITION H3054D12-3 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone
H3054D12 3', mRNA sequence.
ACCESSION BG067439
VERSION BG067439.1
DBLINK BioSample: SAMN00163148
KEYWORDS EST.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 689)
AUTHORS Kargul,G.J., Dudekula,D.B., Qian,Y., Lim,M.K., Jaradat,S.A.,
Tanaka,T.S., Carter,M.G. and Ko,M.S.H.
TITLE Verification and initial annotation of NIA mouse 15K cDNA clone set
JOURNAL Unpublished
COMMENT Other_ESTs: H3054D12-5
Contact: George J. Kargul
Laboratory of Genetics
National Institute on Aging/National Institutes of Health
333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA
Email: cdna@lgsun.grc.nia.nih.gov
This clone set has been freely distributed to the community. Please
visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details.
Plate: H3054 row: D column: 12
Seq primer: -21M13 Forward
POLYA=Yes.
FEATURES Location/Qualifiers
source 1..689
/organism="Mus musculus"
/mol_type="mRNA"
/strain="C57BL/6J"
/db_xref="niaEST:H3054D12-3"
/db_xref="taxon:10090"
/clone="H3054D12"
/sex="clones arrayed from a variety of cdna libraries"
/clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set"
/dev_stage="Clones arrayed from a variety of cDNA
libraries"
/lab_host="DH10B"
/note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This
clone is among a rearrayed set of 15,247 clones from 11
embryo cDNA libraries (including preimplantation stage
embryos from unfertilized egg to blastocyst, embryonic
part of E7.5 embryos, extraembryonic part of E7.5 embryos,
and E12.5 female mesonephros/gonad) and one newborn ovary
cDNA library. Average insert size 1.5 kb. All source
libraries are cloned unidirectionally with Oligo(dT)-Not
primers. References include: (1) Genome-wide expression
profiling of mid-gestation placenta and embryo using a
15,000 mouse developmental cDNA microarray, 2000, Proc.
Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale
cDNA analysis reveals phased gene expression patterns
during preimplantation mouse develolpment, 2000,
Development, 127: 1737-1749; (3) Genome-wide mapping of
unselected transcripts from extraembryonic tissue of
7.5-day mouse embryos reveals enrichment in the t-complex
and under-representation on the X chromosome, 1998, Hum
Mol Genet 7: 1967-1978."
BASE COUNT 221 a 129 c 164 g 175 t
ORIGIN
1 aaaatgtaga aggtaagatt taataaagta gcaacaacat gaaagcacac agaccagagc
61 tctggggtcg aaataaagca gcaacatgga agcacacaga gctctggggt cgaaactcat
121 acaccttagc acagggtaga ggagtctcga cgaccagcca aaatttttca caggcttata
181 tagtaaaact caaagggggg agaactggac agggaaagta caagtttaca tcactaggga
241 gttctgccaa gggacaaggg gttctgccaa aggattctac gtaactaagg agtcatgtcc
301 tatcaaggaa cctacgtaac taaggagtca tgtcctatca aggaacctac gtaactaagg
361 agtcatgtct tatcatttgg caatgtcatt ttgaggttgt tccaggaggc ctttatctca
421 aaaatgtttt ctagatggga gggggtgggc tccgaggtga aagttcatgt tctcacaaga
481 ggccagtaat ttttcattct tcattcccca cttcttcttg taagtaattc taatcttaga
541 atttcagaag tctatatctc tatgtggaga atactgcatt tactctatct ttaacatggg
601 aacagaaaca gaataaggca gattagtaaa cagaactagg cagggaccct tttagtgagg
661 cttgagggtc tcagcatgac gcaggtgta
//