LOCUS BG067341 933 bp mRNA linear EST 26-JAN-2001 DEFINITION H3053C11-3 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3053C11 3', mRNA sequence. ACCESSION BG067341 VERSION BG067341.1 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 933) AUTHORS Kargul,G.J., Dudekula,D.B., Qian,Y., Lim,M.K., Jaradat,S.A., Tanaka,T.S., Carter,M.G. and Ko,M.S.H. TITLE Verification and initial annotation of NIA mouse 15K cDNA clone set JOURNAL Unpublished COMMENT Other_ESTs: H3053C11-5 Contact: George J. Kargul Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov This clone set has been freely distributed to the community. Please visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details. Plate: H3053 row: C column: 11 Seq primer: -21M13 Forward POLYA=Yes. FEATURES Location/Qualifiers source 1..933 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3053C11-3" /db_xref="taxon:10090" /clone="H3053C11" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 218 a 209 c 207 g 299 t ORIGIN 1 ccgttttgtt tttttgtttt actattttat acagggtttc ttttaccagt cttaatttgt 61 ctataacttg atagtcttta gactgtcagg atcattgctc tttaggatgc ctgggcggtt 121 agatttgcca tctgatttct tttagccaca gcatcttagg tctttctctg cagatgtcta 181 tatatataga gcttgtatta aagccacaag tttagctttc tgggctgaag tccctttagg 241 gaggctgctg gcctagatca cttgctttct gtccatcact gcactgctgt ccccgccttc 301 cgcttaccct taacctcgag gctactgcca tccgtgtacc agctcaaact ctcaggccaa 361 ggctgatctg atctttcaga tcatttcgag tatgagtttc ttctgccaga atgtcagcac 421 aatgatgagt aggtgaagtc tcaggcagta gtgagattga ggatagcagg gggagcgaag 481 gtcactcgtt cagtcaacaa aaagctctga caatgtgtcc atcggtcagg gggacggttg 541 gataatgttt tcaagagcgt tagtcagcca tcggtcatgg gggctgaacc acactttcta 601 ggacatgtgc caagttttgt ctcagagtca atttatctgc gtccttgacc agaagccact 661 atgtgcagac aagcaggcca tcctacagcc accaggtcta attttttata caagtatgcc 721 acaggtcttt tttagggtcc aatctctgag taagaacttc ttttggcaat acctttgttc 781 tcagtcacat ctaggagtcc catagctggg gataacatta gggcagtctc aagagcatct 841 aaggccatgt aagattgttc cttttgtttg ttctttatac gaagggctgt ttatctcttg 901 actcagcaaa actggaatcc acatctgcaa agc //