LOCUS BG066238 581 bp mRNA linear EST 12-MAY-2010 DEFINITION H3040E12-3 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3040E12 3', mRNA sequence. ACCESSION BG066238 VERSION BG066238.2 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 581) AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X., Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H., Wood,W.H. III, Becker,K.G. and Ko,M.S.H. TITLE Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000) PUBMED 10922068 COMMENT On Jan 26, 2001 this sequence version replaced BG066238.1. Other_ESTs: H3040E12-5 Contact: George J. Kargul Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov This clone set has been freely distributed to the community. Please visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details. Plate: H3040 row: E column: 12 Seq primer: -21M13 Forward POLYA=Yes. FEATURES Location/Qualifiers source 1..581 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3040E12-3" /db_xref="taxon:10090" /clone="H3040E12" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 159 a 126 c 131 g 165 t ORIGIN 1 ggagacagag tttctctgtg tagcccaggc tggcctcaaa ctcagagatc tgcctgcctc 61 tgcctaacaa gtgctaggat taaaggtgcg caccatcaag tctggcttta agattctatt 121 ctgaattaca tggttatgtg ggtgtctgca tgggagtatg tacatgtgag tacaggttcc 181 ctcagaagcg aggaagacag catcagacct cccagagctg aagccatagg aggtcctgcc 241 tcacctgatg tgggagctta gaactgacct tgggccttac acaagggcag tatgtgcttc 301 taacctctaa gcaacatttg cagctctatg ggtttgtgtt tttagataga gtcttatata 361 tagcaaagaa tgggtttgaa cttctaatcc tttgtcctct acttctcaga tgctgggact 421 acaggcatgt gtcacacttt ggctaaggat ccatgtctat agctctaaga aaaccccaaa 481 tcaaaagtaa aagagaagta gttctcattt agcccttatt ttatgatagc tacactgata 541 agaaattagt gggcatttct tctcctaaga cccataaaac c //