LOCUS BG066165 645 bp mRNA linear EST 12-MAY-2010 DEFINITION H3039F10-3 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3039F10 3', mRNA sequence. ACCESSION BG066165 VERSION BG066165.2 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 645) AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X., Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H., Wood,W.H. III, Becker,K.G. and Ko,M.S.H. TITLE Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000) PUBMED 10922068 COMMENT On Jan 26, 2001 this sequence version replaced BG066165.1. Other_ESTs: H3039F10-5 Contact: George J. Kargul Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov This clone set has been freely distributed to the community. Please visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details. Plate: H3039 row: F column: 10 Seq primer: -21M13 Forward POLYA=Yes. FEATURES Location/Qualifiers source 1..645 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3039F10-3" /db_xref="taxon:10090" /clone="H3039F10" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 139 a 141 c 137 g 228 t ORIGIN 1 aagatatgct taaactacaa gagagcattt aagcgtaacc tttattccaa tattcatact 61 ttatatttgt gagttaagag aacggtagaa aagccatttt ctgggagtaa tgaagagaaa 121 tctaccccac tatttggtgt ttgttgggtt catttatcga acatttgatt catgagatgc 181 acactgatta cgccgcagcc tctttattct gccaactctt gtcttcctgg ctggctggtt 241 ggatgttaag gccattcatt gccttgtcat tctctcaagg tgcctctcat gcccttcaca 301 gccagaaagt acagttagtg agggtccctc tgtgctactt gtgggtttct ttccactgcc 361 gagactctgg atttgtcaaa cactactgtt ttgatcttgg cactttgata ttcggtccag 421 ctcctgctgt tctgtccttt gcgcacgttt acagccttga ctgggttgtt tgccctttgc 481 tgcttcccca ggagtacttt tccttctctc agatttcatt atgcagtcat ttctttagtg 541 ttgtcaagtg ggactgttcc aattctgaca tatttaattc agctctgaca agtaagcgta 601 gtagttgggc tggtttggca ctgtgaattg tgagacttca ccagt //