LOCUS BG066139 725 bp mRNA linear EST 12-MAY-2010 DEFINITION H3039D05-3 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3039D05 3', mRNA sequence. ACCESSION BG066139 VERSION BG066139.2 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 725) AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X., Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H., Wood,W.H. III, Becker,K.G. and Ko,M.S.H. TITLE Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000) PUBMED 10922068 COMMENT On Jan 26, 2001 this sequence version replaced BG066139.1. Other_ESTs: H3039D05-5 Contact: George J. Kargul Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov This clone set has been freely distributed to the community. Please visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details. Plate: H3039 row: D column: 05 Seq primer: -21M13 Forward POLYA=Yes. FEATURES Location/Qualifiers source 1..725 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3039D05-3" /db_xref="taxon:10090" /clone="H3039D05" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 177 a 195 c 166 g 187 t ORIGIN 1 agtaaaagta tctggtgctg aagggttggc tcagcagtta agaacactgg ctacacttcc 61 aaaggaccca ggttcaattc ccagcaccca catggcagct cacaactgtt cacaactcca 121 gtcccagggg atctgacacc ctcacctagg cgtgcatgca tgcaggcaaa acactacagc 181 acatagaact gcctataact ccagcttcag ggatttgatg ccactggctg ccacaggcac 241 atgactaaca cacacacaca cacacacaca cacacacact ttttttttgt tgttgttgtt 301 ttttgttttt cgagacaggg ttaggggttt tggacattca ccatgtgggt tagggctttt 361 ttccaactct ggggcgggga ctttttctat tattataaat attttgtgcg tgtaagcgtg 421 tagtaacatg ttataattac actcttcccc ctcctgccgt gcttggaatc aaactggggt 481 ttctcacttg taggcaagca ctctgctgtc gaacttcacc aagacacacc ctgagctata 541 ggcagaccag ggctgagcaa tggcatgggc tctgaaaggt tcccagaact tgagagctgt 601 tttcaagcca gagcctaggg caggttccag acacctgctt gctcccgtgt gtcctgcctc 661 tgctaagtgg gtcctgagaa tcacctggct gaggcaactc cacaccatac caacgctcgg 721 ggctc //