LOCUS BG066105 669 bp mRNA linear EST 12-MAY-2010 DEFINITION H3039A01-3 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3039A01 3', mRNA sequence. ACCESSION BG066105 VERSION BG066105.2 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 669) AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X., Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H., Wood,W.H. III, Becker,K.G. and Ko,M.S.H. TITLE Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000) PUBMED 10922068 COMMENT On Jan 26, 2001 this sequence version replaced BG066105.1. Other_ESTs: H3039A01-5 Contact: George J. Kargul Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov This clone set has been freely distributed to the community. Please visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details. Plate: H3039 row: A column: 01 Seq primer: -21M13 Forward POLYA=Yes. FEATURES Location/Qualifiers source 1..669 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3039A01-3" /db_xref="taxon:10090" /clone="H3039A01" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 174 a 117 c 143 g 235 t ORIGIN 1 cccactcctt tttttattct ttttattact atattcaaca taatatataa ttttctacca 61 atcataacaa atgatagaga tgttattaaa tgagcataaa aagataatgt ctttttgttt 121 gtttgttttg tttttagtaa agctgaaaat cttggttctt actgtggtat aaaagcaaga 181 acaattttta gacactggat ttcattgtaa taaggctgta cttcaatgtc cctcacatca 241 ccaaaggatt gtatagtagc taagttaagt gttgacagtt ctgctgcgtc aaggaatgaa 301 ttacaggcac aattatttgg atacagattt cctgctatga tcaaagctat ttgacttgag 361 tgattgtcat cattgtcaag ctttctctgt gattctggga tcctgggatc ctgatcctgg 421 gtatgtccaa gctcctagga gtcaagttgc ctctgggacc ctgagattct ggtgtgacca 481 agctcctagg atcctgtgtt cctgtgatcc tgggtgtgtt aaagcacctg tgagtagggc 541 ttcctctggg tgttatgggg ctggctgtgg agtttgtgcc caagttctgc tcagggcaag 601 ggccaagact ggaagaattc cttcagattc taatataatc agtacttggt gatgtatatt 661 tagcactat //