LOCUS BG063411 623 bp mRNA linear EST 12-MAY-2010 DEFINITION H3006H12-3 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3006H12 3', mRNA sequence. ACCESSION BG063411 VERSION BG063411.2 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 623) AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X., Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H., Wood,W.H. III, Becker,K.G. and Ko,M.S.H. TITLE Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000) PUBMED 10922068 COMMENT On Jan 26, 2001 this sequence version replaced BG063411.1. Other_ESTs: H3006H12-5 Contact: George J. Kargul Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov This clone set has been freely distributed to the community. Please visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details. Plate: H3006 row: H column: 12 Seq primer: -21M13 Forward POLYA=Yes. FEATURES Location/Qualifiers source 1..623 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3006H12-3" /db_xref="taxon:10090" /clone="H3006H12" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 153 a 157 c 142 g 171 t ORIGIN 1 agtctttaaa agattttcat tcattcaaaa atattttgaa ggtcaaatat ccaattcaag 61 acagatggag taatctgtga gtgaactaag aactgtcttt actgaatcga agtaagaact 121 caatcagagt cctcgtgggc cgcccactca tccccttccg caggtaggga atctcatctt 181 tgttggtcat cactcctgct atgtctaagt gtgcccactt cgtatgtgtc acaaactctc 241 gcaggaatgc ggcagctgta cacgcacctg cagatctgta ttttccaaga ttgttgacat 301 cagcaagctg gcaatctatg acttgtcttg tataatgctc aaagaggggc atcctccaga 361 ctcggtcccc agtttctacg ctggcctcaa atagtttgtt ccacagccag gacgaattgg 421 taaagactcc agtggcacct gaccccaggg ctacatccat ggcacctgtt aaggtggcag 481 cattgatgat gaccttggga ttaaaggtgt gtgcataaca gagtgcatcg gccaggatga 541 gcctcccctc ggcgtcagtg ttatcaacct ggatggtctt cccattcctg gctctgacga 601 catcccctgg cttgttggcc ttg //