LOCUS BG063409 672 bp mRNA linear EST 12-MAY-2010 DEFINITION H3006H10-3 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3006H10 3', mRNA sequence. ACCESSION BG063409 VERSION BG063409.2 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 672) AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X., Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H., Wood,W.H. III, Becker,K.G. and Ko,M.S.H. TITLE Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000) PUBMED 10922068 COMMENT On Jan 26, 2001 this sequence version replaced BG063409.1. Other_ESTs: H3006H10-5 Contact: George J. Kargul Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov This clone set has been freely distributed to the community. Please visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details. Plate: H3006 row: H column: 10 Seq primer: -21M13 Forward POLYA=Yes. FEATURES Location/Qualifiers source 1..672 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3006H10-3" /db_xref="taxon:10090" /clone="H3006H10" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 235 a 130 c 92 g 215 t ORIGIN 1 catggaaaaa aagattttta atttttaaat atataagttt gcttaatttc tgatgagctg 61 ttcaacattg ttttaaatat cctgaattag taactatgcc aacaaattta cctccagtgt 121 ttccacagga gacattaaaa taagaccaaa ttatagtttt cttcaaccaa agcagtcttt 181 tctcagtcct ttttgtgcaa aaatattaca agagcaactc aaatgggaac gctgaaatga 241 catgccaaca tttcagggca catttaaaac actcaataat tcttgaagtt actgtatcct 301 aaaatattac taccaaccgt ttatagatta gttctgtata tctactcaga cagatgcata 361 ttcctagacc tctgaaaata aacaggctca ttggtctctt ttggtgtcca cacaataggc 421 aagataggtt tacaatagtg tttaaatcaa actacacatc tacaatctcc tgactccacc 481 acattcaaaa caaaagtcag agtttatttg gctaccttga aatcattccc ataaacctgc 541 tacggttcac tggacctgaa catttctcag aaatgtgtcg tttatcattt cacctaagtg 601 atgattaggg atcctttaaa aacggttaat gcctaagata caaactttat ctaaatgaat 661 aattgcaata aa //