LOCUS BC171850 5710 bp mRNA linear HUM 02-JAN-2009 DEFINITION Homo sapiens Rho-guanine nucleotide exchange factor, mRNA (cDNA clone MGC:198565 IMAGE:9054504), complete cds. ACCESSION BC171850 VERSION BC171850.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 5710) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 5710) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (19-DEC-2008) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Mike Brownstein, NIMH cDNA Library Preparation: British Columbia Cancer Research Center cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Genome Sequence Centre, BC Cancer Agency, Vancouver, BC, Canada info@bcgsc.bc.ca Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao, Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRCB Plate: 18 Row: J Column: 14. FEATURES Location/Qualifiers source 1..5710 /db_xref="H-InvDB:HIT000503581" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:198565 IMAGE:9054504" /tissue_type="Brain, cerebral cortex, PCR rescued clones" /clone_lib="NIH_MGC_288" /note="Vector: pCR-XL-TOPO; Clone identification sequence tag: TCCGGACT" gene 1..5710 /gene="RGNEF" /db_xref="GeneID:64283" CDS 23..5140 /gene="RGNEF" /codon_start=1 /product="RGNEF protein" /protein_id="AAI71850.1" /db_xref="GeneID:64283" /translation="MELSCSEAPLYGQMMIYAKFDKNVYLPEDAEFYFTYDGSHQRHV MIAERIEDNVLQSSVPGHGLQETVTVSVCLCSEGYSPVTMGSGSVTYVDNMACRLARL LVTQANRLTACSHQTLLTPFALTAGALPALDEELVLALTHLELPLEWTVLGSSSLEVS SHRESLLHLAMRWGLAKLSQFFLCLPGGVQALALPNEEGATPLDLALREGHSKLVEDV TNFQGRWSPSFSRVQLSEEASLHYIHSSETLTLTLNHTAEHLLEADIKLFRKYFWDRA FLVKAFEPEARPEERTAMPSSGAETEEEIKNSVSSRSAAEKEDIKRVKSLVVQHNEHE DQHSLDLDRSFDILKKSKPPSTLLAAGRLSDMLNGGDEVYANCMVIDQVGDLDISYIN IEGITATTSPESRGCTLWPQSSKHTLPTETSPSVYPLSENVEGTAHTEAQQSFMSPSS SCASNLNLSFGWHGFEKEQSHLKKRSSSLDALDADSEGEGHSEPSHICYTPGSQSSSR TGIPSGDELDSFETNTEPDFNISRAESLPLSSNLQSKESLLSGVRSRSYSCSSPKISL GKTRLVRELTVCSSSEEQRAYSLSEPPRENRIQEEEWDKYIIPAKSESEKYKVSRTFS FLMNRMTSPRNKSKTKSKDAKDKEKLNRHQFAPGTFSGVLQCLVCDKTLLGKESLQCS NCNANVHKGCKDAAPACTKKFQEKYNKNKPQTILGNSSFRDIPQPGLSLHPSSSVPVG LPTGRRETVGQVHPLSRSVPGTTLESFRRSATSLESESDHNSCRSRSHSDELLQSMGS SPSTESFIMEDVVDSSLWSDLSSDAQEFEAESWSLVVDPSFCNRQEKDVIKRQDVIFE LMQTEMHHIQTLFIMSEIFRKGMKEELQLDHSTVDKIFPCLDELLEIHRHFFYSMKER RQESCAGSDRNFVIDRIGDILVQQFSEENASKMKKIYGEFCCHHKEAVNLFKELQQNK KFQNFIKLRNSNLLARRRGIPECILLVTQRITKYPVLVERILQYTKERTEEHKDLRKA LCLIKDMIATVDLKVNEYEKNQKWLEILNKIENKTYTKLKNGHVFRKQALMSEERTLL YDGLVYWKTATGRFKDILALLLTDVLLFLQEKDQKYIFAAVDQKPSVISLQKLIAREV ANEERGMFLISASSAGPEMYEIHTNSKEERNNWMRRIQQAVESCPEEKGGRTSESDED KRKAEARVAKIQQCQEILTNQDQQICAYLEEKLHIYAELGELSGFEDVHLEPHLLIKP DPGEPPQAASLLAAALKEAESLQVAVKASQMGAVSQSCEDSCGDSVLADTLSSHDVPG SPTASLVTGGREGRGCSDVDPGIQGVVTDLAVSDAGEKVECRNFPGSSQSEIIQAIQN LTRLLYSLQAALTIQDSHIEIHRLVLQQQEGLSLGHSILRGGPLQDQKSRDADRQHEE LANVHQLQHQLQQEQRRWLRRCEQQQRAQATRESWLQERERECQSQEELLLRSRGELD LQLQEYQHSLERLREGQRLVEREQARMRAQQSLLGHWKHGRQRSLPAVLLPGGPEVME LNRSESLCHENSFFINEALVQMSFNTFNKLNPSVIHQDATYPTTQSHSDLVRTSEHQV DLKVDPSQPSNVSHKLWTAAGSGHQILPFQESSKDSCKNDLDTSHTESPTPHDSNSHR PQLQAFITEAKLNLPTRTMTRQDGETGDGAKENIVYL" BASE COUNT 1622 a 1291 c 1399 g 1398 t ORIGIN 1 catcgctcca gatgcgaaag ccatggagtt gagctgcagc gaagcacctc tttacgggca 61 gatgatgatc tatgcgaagt ttgacaaaaa tgtgtatctt cctgaagatg ctgagtttta 121 ctttacttat gacggatctc atcagcgaca tgtcatgatt gcagagcgca tcgaggataa 181 cgttctccag tccagcgtcc caggccatgg gcttcaggag acggtgacgg tatctgtgtg 241 cctctgctcg gaaggttact ctccggtgac catgggctct ggctcagtga cctacgtgga 301 caacatggct tgcaggctgg ctcgtctgct ggtgacgcag gccaatcgcc tcacagcctg 361 cagccaccag accctgctga ccccatttgc cttgacggca ggagcactgc ctgccttgga 421 tgaggagctc gtgctggctc tgacccatct ggaattgcct ctagagtgga ctgtgttggg 481 aagttcttca cttgaagtat cttctcacag agaatctctt ctacacctgg ctatgagatg 541 gggcctggct aaactttccc agttcttctt gtgtctcccg gggggagtcc aggccttggc 601 tttacccaac gaagagggtg ccacaccatt agacttagct ttacgtgaag gacactccaa 661 gctggtggaa gacgtcacaa attttcaggg cagatggtcc ccaagcttct cccgagtgca 721 gctcagtgaa gaagcctcct tgcattacat tcactcatcg gaaacgctga ccctgaccct 781 gaaccacaca gccgagcatt tgttggaggc agatattaaa ctcttccgga aatacttttg 841 ggatagagcc tttcttgtca aggcctttga gccagaagcc aggccagagg aaagaacagc 901 tatgccctcc agcggtgcag aaactgaaga agagattaag aattcagtgt ccagcagatc 961 agcagctgaa aaggaagata taaagcgtgt caaaagcctg gtggttcaac acaatgaaca 1021 tgaagaccag cacagcctag atttggatcg ctccttcgat atcctaaaaa aatccaagcc 1081 gccctcgaca ttgcttgctg caggccggct ttcagacatg ctgaatggag gtgatgaagt 1141 ctacgctaac tgtatggtga ttgatcaggt tggtgatttg gatatcagct atattaatat 1201 agagggaatc actgccacta ccagccctga atccagaggt tgcactctgt ggcctcagag 1261 cagcaaacac acccttccta cagaaaccag tcccagtgtg tacccactta gtgaaaatgt 1321 cgaagggaca gcacacactg aagcccagca gtccttcatg tcaccatcaa gttcgtgtgc 1381 ttccaacttg aatctttctt ttggttggca tggatttgaa aaggaacaaa gtcatctaaa 1441 gaaaagaagt tctagccttg atgccttgga cgccgacagt gaaggggaag ggcattctga 1501 gccatcccac atctgttaca ctccagggtc tcagagctcc tcaagaactg ggattcctag 1561 tggggatgaa ttggactctt ttgagactaa cactgaaccg gattttaata tctccagggc 1621 tgaatccctt cctctatcaa gtaatctaca gtcgaaggaa tcactgcttt ctggagttcg 1681 ctcacgttct tattcttgct catcacccaa aatttcttta ggaaaaactc gtttggtgcg 1741 tgaattaaca gtatgcagtt caagtgaaga gcaaagagct tacagcttat cggagccacc 1801 aagagaaaac agaattcagg aagaagaatg ggataaatac atcatacctg ccaaatcaga 1861 gtctgaaaaa tataaagtga gtcgaacttt cagtttcctc atgaatagga tgactagccc 1921 tcggaataaa tcaaagacaa aaagcaagga tgccaaagat aaagagaagc tgaatcgaca 1981 tcagtttgcc ccaggaacat tctctggggt tctgcagtgt ttggtttgtg ataaaacact 2041 cctggggaaa gagtcactgc agtgttctaa ctgtaatgca aatgtgcaca aaggttgtaa 2101 agatgctgcg cctgcatgca ccaagaaatt ccaagagaaa tataacaaga acaaaccaca 2161 gaccatcctt ggaaattctt catttagaga catcccacag cctggtctct ccttgcaccc 2221 ttcttcctcc gtgcctgttg gattgccgac tggaaggagg gagactgtgg gacaggtcca 2281 tccattgtcc agaagtgttc caggcaccac cttggaaagc ttcaggaggt cagccacatc 2341 cttggagtct gagagtgacc ataacagctg cagaagcagg tctcattctg atgagctgct 2401 acagtccatg ggctcttctc cctctacaga gtctttcata atggaagatg ttgtggattc 2461 ttctctgtgg agtgacctca gcagtgatgc ccaggagttt gaagcagaat cttggagtct 2521 tgtggtggat ccctcatttt gtaataggca ggagaaggat gtcatcaaaa gacaggatgt 2581 catttttgag ctaatgcaaa cagagatgca tcacatccag accctgttca tcatgtctga 2641 gatcttcagg aaaggcatga aagaggagct gcagctggac cacagcaccg tggataaaat 2701 tttcccctgt ttagatgagt tgcttgaaat ccacaggcat ttcttctaca gtatgaagga 2761 acgaaggcag gaatcctgtg ctggcagcga caggaatttt gtgatcgacc gaattggaga 2821 tattttggta caacagtttt cagaagaaaa tgcaagtaaa atgaagaaaa tatatggaga 2881 attctgttgc catcataaag aagctgttaa cctctttaaa gaactccagc agaataaaaa 2941 gtttcagaat tttattaagc tccgaaatag taatcttttg gctcgacgcc gaggaattcc 3001 agaatgcatt ctgttggtca ctcagcgtat tacaaaatac cctgtcttgg tggaaaggat 3061 attgcagtac acaaaggaaa gaactgagga acataaagac ttacgcaaag cgctttgctt 3121 aattaaagac atgattgcaa cagtggattt aaaagtcaat gaatatgaga aaaaccaaaa 3181 atggcttgag atcctaaata agattgaaaa caaaacatac acgaagctca aaaatggaca 3241 tgtgtttagg aagcaggcac tgatgagtga agaaaggact ctgttatatg atggccttgt 3301 ttactggaaa actgctacag gtcgtttcaa agatatccta gctctacttc taactgatgt 3361 gctgctcttt ttacaagaaa aagaccagaa atacatcttt gcagccgttg atcagaagcc 3421 atcagttatt tcccttcaaa agcttattgc tagagaagtt gctaatgagg agagaggaat 3481 gtttctgatc agtgcttcat ctgctggtcc tgagatgtat gaaattcaca ccaattccaa 3541 ggaggaacgc aataactgga tgagacggat ccagcaggct gtagaaagtt gtcctgaaga 3601 aaaaggggga aggacaagtg aatctgatga agacaagagg aaagctgaag ccagagtggc 3661 caaaattcag caatgtcaag aaatactcac taaccaagac caacaaattt gtgcgtattt 3721 ggaggagaag ctgcatatct atgctgaact tggagaactg agcggatttg aggacgtcca 3781 tctagagccc cacctcctta ttaaacctga cccaggcgag cctccccagg cagcctcatt 3841 actggcagca gcactgaaag aagctgagag cctacaagtt gcagtgaagg cctcacagat 3901 gggcgccgtg agtcaatcat gtgaggacag ttgtggagac tctgtcttgg cggacacact 3961 cagttctcat gatgtaccag gatcaccgac tgcctcatta gtcacaggag ggagagaagg 4021 aagaggctgt tcggatgtgg atcccgggat ccagggtgtg gtaaccgact tggccgtctc 4081 tgatgcaggg gagaaggtgg aatgtagaaa ttttccaggt tcttcacaat cagagattat 4141 acaagccata cagaatttaa cccgtctctt atacagcctt caggccgcct tgaccattca 4201 ggacagccac attgagatcc acaggctggt tctccagcag caggagggcc tgtctctcgg 4261 ccactctatc ctccgaggcg gccccttgca ggaccagaag tctcgcgacg cggacaggca 4321 gcatgaggag ctggccaatg tgcaccagct tcagcaccag ctccagcagg agcagcggcg 4381 ctggctgcgc aggtgtgagc agcagcagcg ggcgcaggcg accagggaga gctggctgca 4441 ggagcgggag cgggagtgcc agtcgcagga ggagctgctg ctgcggagcc ggggcgagct 4501 ggacctccag ctccaggagt accagcacag cctggagcgg ctgagggagg gccagcgcct 4561 ggtggagagg gagcaggcga ggatgcgggc ccagcagagc ctgctgggcc actggaagca 4621 cggccggcag aggagcctgc ccgcggtgct ccttccgggt ggccccgagg taatggaact 4681 taatcgatct gagagtttat gtcatgaaaa ctcattcttc atcaatgaag ctttagtaca 4741 aatgtcattt aacactttca acaaactgaa tccatcagtt atccatcagg atgccactta 4801 ccctacaact caatctcatt ctgacttggt gaggactagt gaacatcaag tagacctcaa 4861 ggtggaccct tctcagcctt cgaatgtcag tcacaaactg tggacagccg ctggttccgg 4921 ccatcagata cttcctttcc aagaaagcag caaggattct tgtaaaaatg atttggacac 4981 ctcccacact gagtccccaa ccccccatga ctcaaattca caccgccctc aactgcaggc 5041 gtttataaca gaagcaaagc taaatctacc gacaaggaca atgaccagac aagatgggga 5101 aactggagat ggagccaaag aaaatattgt ttacctctaa ttgtgttgtc atttttccaa 5161 acaaaacaaa acactggcac ttttgggaga aactttttgt ctccattcct tatgtatgtg 5221 tgattgtctg tgtccaaatt gctttaagaa taatatttaa tatttcctgg aagctcattt 5281 ttttggcatg agtctaatta aattattgaa agccaccctg tttgtataat ctttaactta 5341 tcaaatctaa tttcagattt ctggaggaga aactaacttg aataagcagg actattttaa 5401 aagttgtttt gacgctagag taaaattcca tgtcacattt tctacccaat catctggatt 5461 tcaagattcc ttttaagatc tcaatgaagc aatttggatt taaagagtgg tattcacaag 5521 gggtgaactt tcacagtcag ggcagttgcc tcagtgccca cataggcaga ggaggatgtg 5581 ggaaagggtt tttctcagct agtttttgtg tgctcatttc ttctgggagc attaaaagtg 5641 gtgatctgtt acagtcacta ttcaactggg cacgtgttgt gattggtcag tcactgagcc 5701 agggatacag //