LOCUS BC158177 1272 bp mRNA linear VRT 10-JUN-2008
DEFINITION Danio rerio hypothetical protein LOC794885, mRNA (cDNA clone
MGC:171578 IMAGE:7403042), complete cds.
ACCESSION BC158177
VERSION BC158177.1
KEYWORDS MGC.
SOURCE Danio rerio (zebrafish)
ORGANISM Danio rerio
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
Cypriniformes; Danionidae; Danioninae; Danio.
REFERENCE 1 (bases 1 to 1272)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1272)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (17-JAN-2008) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: John Ngai, Nancy Freeman, NIDCD
cDNA Library Preparation: Dr. Sumio Sugano
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 311 Row: n Column: 13
This clone was selected for full length sequencing because it
passed the following selection criteria: Hexamer frequency ORF
analysis, Similarity but not identity to protein.
FEATURES Location/Qualifiers
source 1..1272
/organism="Danio rerio"
/mol_type="mRNA"
/db_xref="taxon:7955"
/clone="MGC:171578 IMAGE:7403042"
/tissue_type="Olfactory epithelium"
/clone_lib="NIH_ZGC_14"
/lab_host="DH10B"
/note="Vector: pME18S-FL3"
gene 1..1272
/gene="LOC794885"
/db_xref="GeneID:794885"
CDS 168..803
/gene="LOC794885"
/codon_start=1
/product="LOC794885 protein"
/protein_id="AAI58178.1"
/db_xref="GeneID:794885"
/translation="MACGATLKRSMEFEALLSPQSPKRRRCNPLPGTPTTPSPQRCSL
RPSTESPAHSMSPQSMGGEHRLTPDMKALGILGNCLQQDGNVVQQIEQIFQNIRQEYS
RYQRRRQLEGAFNQTEPCSSTDIQSSSPALTSPSSPTGASSLKKDQPLFTLRQVGYLC
ERLIKDHEEKMREEYEQILNTKLAEQYESFVKFTQDQIMRRYGARPASYVS"
BASE COUNT 371 a 291 c 263 g 347 t
ORIGIN
1 aaaaaaaacc ggtgtgcgat cgtaggggga gccttcgatt tcgtacggag ctccgtttaa
61 aaaaactgtt ataaagtcaa tttacaaagg gaattcgacg cgttttacca actaaacgct
121 gttgttttac cgtctgattt gtttattgtg ttgttaaata aacgatcatg gcttgtggcg
181 cgacgttgaa gcgatctatg gagtttgagg cccttctcag cccgcagtcc cccaagcgga
241 ggaggtgcaa tcctctaccg gggactccga ctactccttc cccgcagagg tgcagtcttc
301 gtccgtcaac agagagccca gcacactcga tgtcgcctca gtctatgggt ggagagcaca
361 ggctaacccc agacatgaag gcacttggga ttcttggcaa ctgtttacaa caagatggaa
421 atgtggtgca gcaaatagag cagatcttcc agaacattcg tcaggagtac agtcgctatc
481 agaggcgacg acagttggaa ggggccttta accagaccga gccctgcagc tccaccgata
541 tccagagctc cagtcccgcc cttacctccc ccagttctcc cacaggtgcc tcatcattga
601 agaaggatca gccactgttc acactgaggc aggttggcta tttgtgtgag cgccttatca
661 aagatcacga ggagaagatg cgtgaagagt acgaacaaat actgaacaca aagcttgcag
721 aacaatacga gtccttcgtg aaattcacac aggatcagat tatgcgaaga tatggtgcca
781 ggcctgcaag ctatgtgtct tgaagaacat tatagatggt acttgccatc cctcagcagc
841 tggttgctac agtaccagct tcctttgttt cacttgaaat ttcctccatt cttttgattc
901 tatttttttc tcctttaaaa tgcttgggtg ccatgttcta tccacattta actcattttt
961 attgctgaac tgttactgat ggcccaacac caaacatgca tatctagatg cattctaaga
1021 aggtttaatc tctttaagaa tttctgagaa aagatgtcaa ctatcgctgt aaaaagcttg
1081 actgatgcga tcatctctgt ataatgtaac gtgactgatc tgcagcagat ttacctgact
1141 ctccctctat ccttcggtct gttttttaac tcttcacctc cttttttttc tttttttgac
1201 aaataaaata tctgtgataa gtcaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
1261 aaaaaaaaaa aa
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