LOCUS BC155804 1988 bp mRNA linear VRT 09-JUN-2008
DEFINITION Danio rerio zgc:174985, mRNA (cDNA clone MGC:174985 IMAGE:6964795),
complete cds.
ACCESSION BC155804
VERSION BC155804.1
KEYWORDS MGC.
SOURCE Danio rerio (zebrafish)
ORGANISM Danio rerio
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
Cypriniformes; Danionidae; Danioninae; Danio.
REFERENCE 1 (bases 1 to 1988)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1988)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-DEC-2007) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Leonard I. Zon, M.D.
cDNA Library Preparation: Invitrogen Corp
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 318 Row: e Column: 12
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi:
113677035.
FEATURES Location/Qualifiers
source 1..1988
/organism="Danio rerio"
/mol_type="mRNA"
/db_xref="taxon:7955"
/clone="MGC:174985 IMAGE:6964795"
/tissue_type="Embryo, zebrafish 24 hpf"
/clone_lib="NCI_CGAP_ZEmb2"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6.1"
gene 1..1988
/gene="zgc:174985"
/db_xref="GeneID:799508"
/db_xref="ZFIN:ZDB-GENE-080219-17"
CDS 353..1273
/gene="zgc:174985"
/codon_start=1
/product="zgc:174985 protein"
/protein_id="AAI55805.1"
/db_xref="GeneID:799508"
/db_xref="ZFIN:ZDB-GENE-080219-17"
/translation="MSVEVRLKKLEKLIMDGPSQSSGQCFSMETLLDILVCLYDECSS
SPIRREKNVLEFLDWDGGGIGTGLLQPQSARQCRLQPQSARQCRLQPQSARQCRLQPQ
SARQCRLQPQSARQCRLQPQSARQCRLQPQSARQCRLQPQSARQCRLQPQSARQCRLQ
PQSARQCRLQPQSARQCRLQPQSARQCRLQPQSAVQCQCRLQPQSAVQCQFQSGPWLY
RRHSSSSPCRHLPGSSPCRRHPGSSPCRPHPGSSPCRLQPSCLLSRRLQPSCLLSRRL
QPSCLLSRRLQPSCLLSRWPQSSSLSSRLS"
BASE COUNT 386 a 645 c 473 g 484 t
ORIGIN
1 tgctgatgcg cttttgttac tgcataatgg ataaccacat atatcaccat atctcagggg
61 attgctttaa acttctttgg tgacttcttt tgtgcaaact gtccttcaaa ggagacgctg
121 cagtcgggaa tacataagcc taggttatat acgtcaaatc caccggccag ggcagggtcg
181 atggctgtaa gttctctgca cctacggact gcgaattcat gatgttgtgg attgatatat
241 ggaggaatcc ttgcgaaagg aaccatgatt gactccttat ctttttgagt cattaagctt
301 ttttttgtgc aaatactgag catactgtga ggcatcagca ccatttgaaa ccatgtctgt
361 ggaggtgcgt ttaaagaagc tggagaaact gattatggat ggcccgtctc agtccagcgg
421 ccagtgcttc agcatggaga ccttgttgga tatcttagtt tgcctgtacg acgagtgcag
481 cagttctccc atcagaagag agaagaacgt cctggagttt ctagactggg acggaggagg
541 cataggaaca ggactgctcc agccccagag cgcccgccag tgtcggctcc agccccagag
601 cgcccgccag tgtcggctcc agccccagag cgcccgccag tgtcggctcc agccccagag
661 cgcccgccag tgtcggctcc agccccagag cgcccgccag tgtcggctcc agccccagag
721 cgcccgccag tgtcggctcc agccccagag cgcccgccag tgtcggctcc agccccagag
781 cgcccgccag tgtcggctcc agccccagag cgcccgacag tgtcggctcc agccccagag
841 cgcccgccag tgtcggctcc agccccagag cgcccgccag tgtcggctcc agccccagag
901 cgcccgccag tgtcggctcc agccccagag cgcagtacaa tgccagtgtc ggctccagcc
961 ccagagcgca gtacaatgcc agttccagtc cggcccctgg ctttaccggc gccactcaag
1021 ctcctcgccc tgccgtcacc tcccaggctc ctcgccctgc cgtcgccacc caggctcctc
1081 gccctgccgg ccccacccag gctcctcgcc ctgccggctc cagcccagct gcctcctgtc
1141 ccgccggctc cagcccagct gcctcctgtc ccgccggctc cagcccagct gcctcctgtc
1201 ccgccggctc cagcccagct gcctcttgtc ccgctggccc cagtccagct ccctctccag
1261 ccggctctcc taaagacccc tgccttgtgt cccctaaggg atcatccatg ggtcatccct
1321 cccgaccctc cctggtggtc cttcccacta cttgggacag attcaccggc tgcaccctgg
1381 cttcctgctg gggtgcctga cccacagact gaccctgata tggccctccc atccctccct
1441 ttgttcctgc tccactccgc cccccctctt ggaaccagtc tgggagcgtc tggaagccgc
1501 tctttagagg gggggtaatg tcacatccgt cagtgaccac ctgagggcgc tgtagtgcac
1561 taggactttg taggcactac agcgtcccag gaaaagaact acatttttat acatgccccg
1621 cgcacacacc ggaacaccta cactgacctg tcatcacatc tgttttgtgt tgccgttgat
1681 tatctggact atttatacaa ccatttcacc acagtttgtc atcgcgtcgt ttgtctacct
1741 tgtctgtctt gttcccagtc ctgcagtaag tttgatattc ttagttgttg ttcctgatcg
1801 tgttttttgt atttttgctt agtctagttt ttttgagttt tgtttcctga gccttgtctc
1861 tgttttagtt tctgattttg tgatttattt gtactttgaa cgccttgttt tatgtttttg
1921 cactgttaat aaatctgcac ttgaatccgc aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
1981 aaaaaaaa
//