LOCUS BC154154 2379 bp mRNA linear VRT 25-JUL-2008
DEFINITION Danio rerio Ras-related GTP binding C, mRNA (cDNA clone MGC:173628
IMAGE:7414667), complete cds.
ACCESSION BC154154
VERSION BC154154.1
KEYWORDS MGC.
SOURCE Danio rerio (zebrafish)
ORGANISM Danio rerio
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
Cypriniformes; Danionidae; Danioninae; Danio.
REFERENCE 1 (bases 1 to 2379)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2379)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (06-OCT-2007) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: John Postlethwait, University of Oregon
cDNA Library Preparation: Dr. Sumio Sugano
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 315 Row: n Column: 1
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 63101409.
FEATURES Location/Qualifiers
source 1..2379
/organism="Danio rerio"
/mol_type="mRNA"
/db_xref="taxon:7955"
/clone="MGC:173628 IMAGE:7414667"
/tissue_type="Ovary"
/clone_lib="NIH_ZGC_5"
/lab_host="DH10B"
/note="Vector: pME18S-FL3"
gene 1..2379
/gene="rragc"
/gene_synonym="zgc:111971"
/db_xref="GeneID:573492"
/db_xref="ZFIN:ZDB-GENE-050522-355"
CDS 4..1146
/gene="rragc"
/gene_synonym="zgc:111971"
/codon_start=1
/product="Ras-related GTP binding C"
/protein_id="AAI54155.1"
/db_xref="GeneID:573492"
/db_xref="ZFIN:ZDB-GENE-050522-355"
/translation="MTIQYEAPLADSYGVADSFPKDFGYGEEEGDIEDSPSPSDSKPR
ILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISSSSFVNFQIWDFPGQV
DFFDPTFDYEMIFRGTGALIFVIDAQDDYVEALSRLHLTVSRAYRVNPEINFEVFIHK
VDGLSDDHKIETQRDIHQRANDDLADASLEKLHLSFYLTSIYDHSIFEAFSKVVQKLI
PQLPTLENLLNIFISNSGIEKAFLFDVVSKIYIATDSSPVDMQSYELCCDMIDVVIDV
SCIYGLKEDGSGSAYDKESMAIIKLNNTTVLYLKEVTKFLALVCILREESFERKGLID
YNFHCFRKAIHEVFEVGVSTSRTSNQPVGTPLMKTVALNGTPRSTV"
BASE COUNT 707 a 492 c 546 g 634 t
ORIGIN
1 aacatgacga tccagtacga ggcaccgctg gcggacagct acggagtggc ggactcgttt
61 cccaaagatt tcggatatgg ggaagaggag ggagacattg aggacagtcc ttctccctcc
121 gacagtaaac caagaatcct gctaatgggg ttgaggagga gcgggaagtc ctctatccag
181 aaggtggtgt ttcataagat gtcgcccaat gagaccctct tcctggaaag caccaacaag
241 atctataagg atgacatctc cagcagttcc tttgtcaact tccagatctg ggacttcccg
301 ggacaagtgg acttttttga tccaactttt gattacgaga tgatcttcag aggaactgga
361 gctttgatat ttgtcatcga cgctcaggat gactatgtgg aggctcttag tcgactccac
421 ctaacagtat cgcgggccta cagagtgaac cctgagatca actttgaagt gttcatccat
481 aaagtagatg gcctgtctga tgaccataag atcgagaccc agcgggacat acatcagagg
541 gctaatgatg acctggcaga tgcaagctta gagaaactac atctcagttt ctatttgacg
601 agtatttacg atcactctat cttcgaggcc ttcagtaaag ttgtccagaa gctcatccct
661 cagcttccca cgctggagaa ccttctcaac atctttatat ctaattcagg gatcgagaag
721 gccttcctgt ttgacgtcgt cagtaagatt tacattgcca ctgacagttc accggtggac
781 atgcagtcct atgagctctg ctgtgacatg atcgatgtgg tcattgacgt gtcctgtatt
841 tatggattaa aagaggacgg cagtggcagt gcatatgata aggaatctat ggccatcatc
901 aaactcaaca acaccacagt gctctacctg aaagaagtca ccaagttcct cgctctggtc
961 tgcatcctga gagaagagag ctttgagcgc aaaggattaa tagactacaa tttccactgt
1021 ttccggaaag ccattcatga ggtgttcgag gtgggagttt ccacctcaag gacaagcaac
1081 cagccagttg gcacccctct tatgaaaact gttgccttaa atggaacccc aaggagcact
1141 gtgtagagag aaggtgataa agacaataat gaaaagtgtg gagaagatgg ataaggtaat
1201 aaaagagaaa gactacagga tgggccgcat tctgagtatg ctgaccatca ttaatgctcc
1261 caaaagcttt ataagcaaaa gagtcactaa aacaaacatg ctgcagtgtg tggggcagaa
1321 ttgtaatgtg ggtaagcttg caaagccacg catgtatgga agggaagagg cacaaaagaa
1381 ggtggaacac tttttttgtg actaaaaggc attaacaaac tgttcctcaa gacaacatgt
1441 taaacaaaag tgcaagtcac tggggggaaa agcacagcaa gaaacctcac cctgtcaggt
1501 tgaacctcct gacaacttgg atgaatgctg tatgatatgt tgctggtcac ttaacacagt
1561 agccaagttt aaactggttt actcctaaac acatgaatgt ggcagacgtc tgtgaaaatt
1621 ttgcagtgca caacaatatt gagtgtatac ttctgaagcc ttatgtagag ttgtcctaat
1681 gcaagcccct aatgcacata tgcacacttg gtcacccaaa tgttttgtgt atgaaaggga
1741 ctgaaatgtg atttaatgtg tctcgactgt gggagctaat gcatgtatgt ggtggaaatg
1801 gtgggtgggt gttgtgtatg cacactggct tggggcccag agatgttgtg acatctcaca
1861 caagaatgag gaggagttgt gctgttccaa ctgacctctg ggacactgtg attgcactta
1921 cctcagagga tttcagggat cctaactaac acaatttaaa ctgcttttgc tgtactgttg
1981 cccttcagtt acgttacagc atctttggag gatagatcat gcaatcctag cactttgtag
2041 gatgaacctt aattacttac attccggttc tgaggtgcca atgcagtttt gctcgcatta
2101 aaactttgta atacttgctt tcacttttcc cgatcaccaa tcagcatgtt gtttttaatt
2161 ctgatgaaat ctgctgtaaa ataaagataa taaagacggc tgaagtgaca ggacatttga
2221 atcagttaaa cccattccaa gcatgtcctt agagatgctt cattttatct tgcaatcagc
2281 tctcatctaa ttttgtttaa cagcaactaa attaaactta aagaacacaa cacatttatc
2341 tttaagcttg cttgtgattc taaaaaaaaa aaaaaaaaa
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