LOCUS BC152476 4839 bp mRNA linear HUM 23-AUG-2007
DEFINITION Homo sapiens tubby like protein 4, mRNA (cDNA clone IMAGE:8862614),
complete cds.
ACCESSION BC152476
VERSION BC152476.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4839)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4839)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (21-AUG-2007) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Kazusa DNA Research Inst.
cDNA Library Preparation: Kazusa DNA Research Institute
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRCF Plate: 16 Row: a Column: 12
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..4839
/db_xref="H-InvDB:HIT000436067"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:8862614"
/tissue_type="Clones donated by Kazusa DNA Research Inst."
/clone_lib="Kazusa-KIAA-pBluescriptIISK+"
/lab_host="DH5alpha T1-resistant"
/note="Vector: pBluescript II SK+; Clone identification
sequence tag: NA"
gene 1..4839
/gene="TULP4"
/gene_synonym="RP3-442A17.1"
/gene_synonym="TUSP"
/db_xref="GeneID:56995"
/db_xref="HGNC:HGNC:15530"
CDS 1358..3394
/gene="TULP4"
/gene_synonym="RP3-442A17.1"
/gene_synonym="TUSP"
/codon_start=1
/product="tubby like protein 4"
/protein_id="AAI52477.1"
/db_xref="GeneID:56995"
/db_xref="HGNC:HGNC:15530"
/translation="MYAAVEHGPVLCSDSNILCLSWKGRVPKSEKEKPVCRRRYYEEG
WLATGNGRGVVGVTFTSSHCRRDRSTPQRINFNLRGHNSEVVLVRWNEPYQKLATCDA
DGGIFVWIQYEGRWSVELVNDRGAQVSDFTWSHDGTQALISYRDGFVLVGSVSGQRHW
SSEINLESQITCGIWTPDDQQVLFGTADGQVIVMDCHGRMLAHVLLHESDGVLGMSWN
YPIFLVEDSSESDTDSDDYAPPQDGPAAYPIPVQNIKPLLTVSFTSGDISLMNNYDDL
SPTVIRSGLKEVVAQWCTQGDLLAVAGMERQTQLGELPNGPLLKSAMVKFYNVRGEHI
FTLDTLVQRPIISICWGHRDSRLLMASGPALYVVRVEHRVSSLQLLCQQAIASTLRED
KDVSKLTLPPRLCSYLSTAFIPTIKPPIPDPNNMRDFVSYPSAGNERLHCTMKRTEDD
PEVGGPCYTLYLEYLGGLVPILKGRRISKLRPEFVIMDPRTDSKPDEIYGNSLISTVI
DSCNCSDSSDIELSDDWAAKKSPKISRASKSPKLPRISIEARKSPKLPRAAQELSRSP
RLPLRKPSVGSPSLTRREFPFEDITQHNYLAQVTSNIWGTKFKIVGLAAFLPTNLGAV
IYKTSLLHLQPRQMTIYLPEVRKISMDYINLPVFNPNVFSEDEDDLPGDAVWTD"
BASE COUNT 1299 a 1120 c 1190 g 1230 t
ORIGIN
1 gaaattttaa tttattattc cccccttttt ttcctgcatc tataggataa tattgtaaaa
61 tagcaattga aaccaataat cattaaataa atatcaagga aaatccaagc aaagctttct
121 ttttgttgga ctagtggtgt ggtgtttgga gacagtctct gaatgtgaac aggaaagcac
181 ccatcagcaa aacacgatca ctctctaggg agacagctgg gggaatctga ctctggcttc
241 tgcttttgtt ttaagggatt aacttccctg tcaagtccaa gaagacttgc gtatgagaag
301 attacctgat ggacttaatt ctaagattag cttttttcat caagatggaa aaagatcttt
361 aggagcagaa aaggggagtg ctaactgggg gagcgagaag ggagacgagc aaaagaaaca
421 aaatcttgcc acgtggctct gttttgtcag caagaggatt taagactcac ccagggcaaa
481 cactgggacc actgtaagag cgctggaaca ttctgcctct tgagtgaagg ggccttcttt
541 ctagcctcta tggcactgag gggtgcgccg gctggtggag gagtagtccg atggagccct
601 gcgttccccg gggacacagg gccaagcttt gaggtggaaa gtttctggtt ctgaaacaac
661 aaggagagag tctgtttttc ttcctaaaat ttggactctt gtctgcacaa actctggtct
721 gttttgcacg gtttgtgtgc ctttttttcc ctttatgcaa tctttttcag ctttagcagc
781 agaaatttgt ctagttcagg aaacatgcta gagggtggct tcagaaggaa gatgatcctg
841 tgtattctgt ctctgcatcc gaacttttga agagaaaaat tcgagctaga gggattctta
901 aagccttaag ttacttgaaa tctatgtatt tgcaaccctt tgtctctgga atcatattac
961 actaaactgg aatctcaggc tgaatgagaa taaccaagtg gagtaaaaag aagaaaaccg
1021 tttcttgatc accacttaat taacgatgct ctttctccaa aggatcagca cgttcttcct
1081 ctgagaactt gaaaatacaa atggacccca tgttttttta agcattacct tttcttagaa
1141 gactgccatc atcttttata gaggaatttt ttcactatgc attcagtgga tctttataaa
1201 atactgacct tctaattaga ttcaggtcag tcttaattaa agggggaaaa aagcaacgca
1261 agccaaccac aaaaacacat ataccaatga aagaaattgg tttaaatttc acagcattaa
1321 cattactttt taagtaaaac agttcattga agaaagtatg tatgcagcag tggaacatgg
1381 gcctgtgctt tgcagtgact ccaacatcct gtgcctgtcc tggaaggggc gtgtccccaa
1441 gagtgagaag gagaagcctg tgtgcaggag acgctactat gaggaaggct ggctggccac
1501 gggcaacggg cgaggagtgg ttggggtgac tttcacctct agtcactgtc gcagggacag
1561 gagtactcca cagaggataa atttcaacct ccggggccac aatagcgagg ttgtgctggt
1621 gaggtggaat gagccctacc agaaactggc cacgtgcgat gcggacggag gcatattcgt
1681 gtggattcag tacgagggca ggtggtctgt ggagctggtc aacgaccgcg gggcgcaggt
1741 gagtgatttc acgtggagcc atgatggaac tcaagcactt atttcctatc gagatgggtt
1801 tgtcctggtt gggtctgtca gtggacaaag acactggtca tccgaaatca acttggaaag
1861 tcaaattacg tgtggcatat ggactcctga cgaccaacag gtgctgtttg gcacggccga
1921 tgggcaggtg attgtcatgg attgccacgg cagaatgctg gcccacgtcc tcttgcacga
1981 gtcagacggt gtcctcggca tgtcctggaa ctacccgatc ttcctggtgg aggacagcag
2041 cgagagcgac acggactcag atgactacgc ccctccccaa gatggtccgg cagcatatcc
2101 catcccagtg cagaacatca agcctctgct caccgtcagc ttcacctcgg gagacatcag
2161 cttaatgaac aactacgatg acttgtctcc cacggtcatc cgctcagggc tgaaagaggt
2221 ggtagcccag tggtgcacac agggggactt gctggcagtc gctgggatgg aacggcagac
2281 ccagcttggt gagcttccca atggtcccct tctgaagagt gccatggtca agttctacaa
2341 tgttcgtggg gagcacatct tcacactgga cactctcgtg cagcgcccca tcatctccat
2401 ctgctggggt caccgggatt cgaggctgtt gatggcatca ggaccagccc tgtacgtggt
2461 gcgtgtggag caccgggtgt ccagcctgca gctgctgtgc cagcaggcca tcgccagcac
2521 cttgcgtgag gacaaggacg tcagcaagct gactctgccc ccccgcctct gctcctacct
2581 ctccactgcc ttcatcccca ccatcaagcc cccaattcca gatccgaaca acatgagaga
2641 ctttgtcagc tacccatcag ccggcaacga gcggctgcac tgcaccatga agcgcacaga
2701 ggacgacccg gaggtgggcg gcccgtgcta cacgctctac ctggagtacc tgggcgggct
2761 tgtgcccatc ctcaaagggc ggcgcatcag caagctgcgg ccagagttcg tcatcatgga
2821 cccgcggaca gatagcaaac cagatgaaat ctatgggaac agcttgattt ctactgtgat
2881 cgacagctgc aactgctcag actccagtga cattgagctg agtgatgact gggctgccaa
2941 gaaatctccc aaaatctcca gagctagcaa atcacccaaa ctcccaagga tcagcattga
3001 ggcccgcaag tcacccaagc tgccccgggc tgctcaggag ctctcccggt ccccacggtt
3061 gcccctgcgc aagccctctg tgggctcgcc cagcctgact cggagagagt ttccttttga
3121 agacatcact cagcacaact atcttgctca ggtcacgtct aatatctggg gaaccaaatt
3181 taagattgtg ggcttggctg ctttcctgcc aaccaacctc ggtgcagtaa tctataaaac
3241 cagcctcctg catctccagc cgcggcagat gaccatttat ctcccagaag ttcggaaaat
3301 ttccatggac tatattaatt tacctgtctt caacccaaat gttttcagtg aagatgaaga
3361 tgatttacca ggtgatgcag tttggacgga ttgatggcag tgcgtacatt ctagacttcc
3421 agtatccgtt ctcagccgtg caggcctttg cagttgccct ggccaacgtg actcagcgcc
3481 tcaaatgaag agactggtgt ggggaggaga gagatgcaga gagcctttgg aagaggtctt
3541 cggagatgcc agaggagccc tctaggggtc cgatgcctgg gaggaccaga agccaacagc
3601 aaaactggaa aagcccggca ggcccaggag agggcgctga cctgtggtcg tcatttattt
3661 ggttgggttt tattaccttt tattgtctgt tcttcttttc ttctttcatt tcagtggcat
3721 ttggaagcaa agagtgctag gcacctgctg ttctttcagg aaacagcttg gctgtggtaa
3781 tgctctactg ggcccttcag aatgaagaca gtctgcctta gagcctgcta ttcttttaga
3841 catagggagg atgcattatc ctgtattctc ctccaacatc accactagcg taaaagcaaa
3901 aagcttttac aaaacacagc caaaaattct caagatgcag gttcttgggg aatgggatgg
3961 ggacagcatt tgatttacac tgattatgtt actccccaaa aggtgactta attaataaag
4021 ggcatttggg cagacacact gtgttggacc aacaaagtag gctctttaca ggggtgttct
4081 caccaggtag aaatgcgatt tgctcactga ggatgttggg gaagggacga agggtaaaga
4141 agaaactgca cgtatacaca ggttcacatc actctgcaga cagcaatgtg actcagcgtg
4201 tgacttgtag cagcagtacg agggctacac tcctctgctg aggatgtcta cattgaaagc
4261 ctccactagt ttcatcgttt gtcaaagttc cgtaggatca gtgatggtca ttcagcatga
4321 ctggttctgg gagaaggtga gagacaaaaa tggaaagatc ctggcctgtg gtagtggtag
4381 cagttttctc aaataatgtg gtgacagtca ctagatcctc acatgctgag aaacagcctc
4441 tactctctct gcccctttta ctttttaatc tggaatgcat tactgtaaac atgatctttc
4501 ccatgagata ccatgttcta tgccttccca ttctaaaagt gtggacaacg cttgatttga
4561 aaccacttct tttctcctct tggctacatt aaaattcagt tgactacaaa tgctttctat
4621 caaattagaa atgtaaccaa aaaaatgtta agtgttcacc agggtattaa aatacagagg
4681 agtatggtca aatctttgac aaaattttca tgatcttctc taacaaaaaa agttgtttat
4741 taactgtaca gactgtttac taaggagcta aaccactgag aaaacgttat taaaattgta
4801 atacctaggt aaaaaaaaaa aaaaaaaaaa aaaaaaaaa
//