LOCUS BC152405 4258 bp mRNA linear HUM 23-AUG-2007 DEFINITION Homo sapiens histone deacetylase 9, mRNA (cDNA clone MGC:176629 IMAGE:8862508), complete cds. ACCESSION BC152405 VERSION BC152405.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 4258) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 4258) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (21-AUG-2007) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Kazusa DNA Research Inst. cDNA Library Preparation: Kazusa DNA Research Institute cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Sequencing Group at the Stanford Human Genome Center, Stanford University School of Medicine, Stanford, CA 94305 Web site: http://www-shgc.stanford.edu Contact: (Dickson, Mark) mcd@paxil.stanford.edu Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, R. M. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRCF Plate: 15 Row: a Column: 2. FEATURES Location/Qualifiers source 1..4258 /db_xref="H-InvDB:HIT000435996" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:176629 IMAGE:8862508" /tissue_type="Clones donated by Kazusa DNA Research Inst." /clone_lib="Kazusa-KIAA-pBluescriptIISK+" /lab_host="DH5alpha T1-resistant" /note="Vector: pBluescript II SK+; Clone identification sequence tag: NA" gene 1..4258 /gene="HDAC9" /gene_synonym="HD7" /gene_synonym="HDAC" /gene_synonym="HDAC7" /gene_synonym="HDAC7B" /gene_synonym="HDAC9B" /gene_synonym="HDAC9FL" /gene_synonym="HDRP" /gene_synonym="MITR" /db_xref="GeneID:9734" /db_xref="HGNC:HGNC:14065" /db_xref="MIM:606543" CDS 151..1923 /gene="HDAC9" /gene_synonym="HD7" /gene_synonym="HDAC" /gene_synonym="HDAC7" /gene_synonym="HDAC7B" /gene_synonym="HDAC9B" /gene_synonym="HDAC9FL" /gene_synonym="HDRP" /gene_synonym="MITR" /codon_start=1 /product="histone deacetylase 9" /protein_id="AAI52406.1" /db_xref="GeneID:9734" /db_xref="HGNC:HGNC:14065" /db_xref="MIM:606543" /translation="MHSMISSVDVKSEVPVGLEPISPLDLRTDLRMMMPVVDPVVREK QLQQELLLIQQQQQIQKQLLIAEFQKQHENLTRQHQAQLQEHIKELLAIKQQQELLEK EQKLEQQRQEQEVERHRREQQLPPLRGKDRGRERAVASTEVKQKLQEFLLSKSATKDT PTNGKNHSVSRHPKLWYTAAHHTSLDQSSPPLSGTSPSYKYTLPGAQDAKDDFPLRKT ASEPNLKVRSRLKQKVAERRSSPLLRRKDGNVVTSFKKRMFEVTESSVSSSSPGSGPS SPNNGPTGSVTENETSVLPPTPHAEQMVSQQRILIHEDSMNLLSLYTSPSLPNITLGL PAVPSQLNASNSLKEKQKCETQTLRQGVPLPGQYGGSIPASSSHPHVTLEGKPPNSSH QALLQHLLLKEQMRQQKLLVAGGVPLHPQSPLATKERISPGIRGTHKLPRHRPLNRTQ SAPLPQSTLAQLVIQQQHQQFLEKQKQYQQQIHMNKLLSKSIEQLKQPGSHLEEAEEE LQGDQAMQEDRAPSSGNSTRSDSSACVDDTLGQVGAVKVKEEPVDSDEDAQIQEMESG EQAAFMQQVIGKDLAPGFVIKVII" BASE COUNT 1360 a 816 c 850 g 1232 t ORIGIN 1 ggggaagaga ggcacagaca cagataggag aagggcaccg gctggagcca cttgcaggac 61 tgagggtttt tgcaacaaaa ccctagcagc ctgaagaact ctaagccaga tggggtggct 121 ggacgagagc agctcttggc tcagcaaaga atgcacagta tgatcagctc agtggatgtg 181 aagtcagaag ttcctgtggg cctggagccc atctcacctt tagacctaag gacagacctc 241 aggatgatga tgcccgtggt ggaccctgtt gtccgtgaga agcaattgca gcaggaatta 301 cttcttatcc agcagcagca acaaatccag aagcagcttc tgatagcaga gtttcagaaa 361 cagcatgaga acttgacacg gcagcaccag gctcagcttc aggagcatat caaggaactt 421 ctagccataa aacagcaaca agaactccta gaaaaggagc agaaactgga gcagcagagg 481 caagaacagg aagtagagag gcatcgcaga gaacagcagc ttcctcctct cagaggcaaa 541 gatagaggac gagaaagggc agtggcaagt acagaagtaa agcagaagct tcaagagttc 601 ctactgagta aatcagcaac gaaagacact ccaactaatg gaaaaaatca ttccgtgagc 661 cgccatccca agctctggta cacggctgcc caccacacat cattggatca aagctctcca 721 ccccttagtg gaacatctcc atcctacaag tacacattac caggagcaca agatgcaaag 781 gatgatttcc cccttcgaaa aactgcctct gagcccaact tgaaggtgcg gtccaggtta 841 aaacagaaag tggcagagag gagaagcagc cccttactca ggcggaagga tggaaatgtt 901 gtcacttcat tcaagaagcg aatgtttgag gtgacagaat cctcagtcag tagcagttct 961 ccaggctctg gtcccagttc accaaacaat gggccaactg gaagtgttac tgaaaatgag 1021 acttcggttt tgccccctac ccctcatgcc gagcaaatgg tttcacagca acgcattcta 1081 attcatgaag attccatgaa cctgctaagt ctttatacct ctccttcttt gcccaacatt 1141 accttggggc ttcccgcagt gccatcccag ctcaatgctt cgaattcact caaagaaaag 1201 cagaagtgtg agacgcagac gcttaggcaa ggtgttcctc tgcctgggca gtatggaggc 1261 agcatcccgg catcttccag ccaccctcat gttactttag agggaaagcc acccaacagc 1321 agccaccagg ctctcctgca gcatttatta ttgaaagaac aaatgcgaca gcaaaagctt 1381 cttgtagctg gtggagttcc cttacatcct cagtctccct tggcaacaaa agagagaatt 1441 tcacctggca ttagaggtac ccacaaattg ccccgtcaca gacccctgaa ccgaacccag 1501 tctgcacctt tgcctcagag cacgttggct cagctggtca ttcaacagca acaccagcaa 1561 ttcttggaga agcagaagca ataccagcag cagatccaca tgaacaaact gctttcgaaa 1621 tctattgaac aactgaagca accaggcagt caccttgagg aagcagagga agagcttcag 1681 ggggaccagg cgatgcagga agacagagcg ccctctagtg gcaacagcac taggagcgac 1741 agcagtgctt gtgtggatga cacactggga caagttgggg ctgtgaaggt caaggaggaa 1801 ccagtggaca gtgatgaaga tgctcagatc caggaaatgg aatctgggga gcaggctgct 1861 tttatgcaac aggtaatagg caaagattta gctccaggat ttgtaattaa agtcattatc 1921 tgaacatgaa atgcattgca ggtttggtaa atggatatga tttcctatca gtttatattt 1981 ctctatgatt tgagttcagt gtttaaggat tctacctaat gcagatatat gtatatatct 2041 atatagaggt ctttctatat actgatctct atatagatat caatgtttca ttgaaaatcc 2101 actggtaagg aaatacctgt tatactaaaa ttatgataca taatatctga gcagttaata 2161 ggctttaaat ttatcccaaa gcctgctaca ccaattactt ctaaagaaaa caaattcact 2221 gttattttga gtttatgtgt tgagatcagt gactgctgga tagtctccca gtctgatcaa 2281 tgaagcattc gattagtttt tgattttttg caacatctag aatttaattt tcacatcact 2341 gtacataatg tatcatacta tagtcttgaa cactgttaaa ggtagtctgc cccttccttc 2401 ctctctcttt ttttagttaa gtagaaatgt tctggtcacc atgccagtag tcctaggtta 2461 ttgtgtaggt tgcaattgaa catattagga atacaggtgg ttttaaatat atagatgcaa 2521 attgcagcac tactttaaat attagattat gtctcacata gcactgctca ttttactttt 2581 attttgtgta atttgatgac actgtctatc aaaaaagagc aaatgaagca gatgcaaatg 2641 ttagtgagaa gtaatgtgca gcattatggt ccaatcagat acaatattgt gtctacaatt 2701 gcaaaaaaca cagtaacagg atgaatatta tctgatatca agtcaaaatc agtttgaaaa 2761 gaaggtgtat catattttat attgtcacta gaatctctta agtataattc cataatgaca 2821 tgggcatata ccgtaacatt ctggcaaata acaattagaa aagataggtt taacaaaaaa 2881 atttacttgt atataatgca ccttcaggag gactatgtcc tttgatgcta taaaatacaa 2941 acaactttga aggcaacaga agacactgtt tattcaagtc agttctttgt caggttcctg 3001 ctgttctcct acagaaaagt gattctgtga gggtgaacag gaaatgcctt gtggaaacag 3061 gaagtccaag tgattcatgt actgaggaat gtaggaaaaa aaatctgagg atagtgcttt 3121 actctttctg tttttaaagg gcactctatg aattgattta ttgtctaaga aaataacacc 3181 acaagtaggg aaattgttac ggaagctttt cactggaaca tttccttcat attccctttt 3241 gatatgttta ccttgtttta taggtttact tttgttaagc tagttaaagg ttcgttgtat 3301 taagacccct ttaatatgga taatccaaat tgacctagaa tctttgtgag gttttttcta 3361 ttaaaatatt tatatttcta aatccgaggt atttcaaggt gtagtatcct atttcaaagg 3421 agatatagca gttttgccaa atgtagacat tgttcaactg tatgttattg gcacgtgttg 3481 tttacatttt gctgtgacat ttaaaaatat ttctttaaaa atgttactgc taaagataca 3541 ttatcctttt ttaaaaagtc tccattcaaa ttaaattaac ataactagaa gttagaaagt 3601 ttaaaagttt tccacataat gaaagtcctt ctgataattt gacaaatagc tataatagga 3661 acactcccta tcaccaacat attttggtta gtatattcct tcatattaaa atgacttttt 3721 gtcagttgtt ttgcattaaa aatatggcat gcctaagata aaattgtata ttttttccat 3781 ctcataaata ttcattttct tcaaagtctt ttttcaatct cataaaaaag ggatagtgca 3841 tcttttaaaa tacattttat ttggggagga acatgtggct gagcagactt ttgtataata 3901 ttacttcaaa gatatgtaat cacaaacaaa aaaaactatt ttttataatg tcatttgaga 3961 gagtttcatc agtacagttg gtggacgtta attgtttgaa tttgatagtc tttgaattta 4021 atcaagaaac tacctggaac cagtgaaaag gaaagctgga cttaaataat cttagaatta 4081 attgataaat gtctctttta aaatctactg tatttattat aatttacacc cttgaaggtg 4141 atctcttgtt ttgtgttgta aatatattgt ttgtatgttt cccttcttgc cttctgttat 4201 aagtctcttc ctttctcaaa taaagttttt tttaaaagaa aaaaaaaaaa aaaaaaaa //